Variant report

Variant	rs8027036
Chromosome Location	chr15:44842116-44842117
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:44841189-44842354	GM12892	blood:	n/a	n/a
2	POLR2A	chr15:44841994-44842289	GM12892	blood:	n/a	n/a
3	POLR2A	chr15:44841897-44842123	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr15:44842080-44842403	GM12891	blood:	n/a	n/a
5	POLR2A	chr15:44841695-44842143	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:44841934-44842378	GM12878	blood:	n/a	n/a
7	MXI1	chr15:44841989-44843706	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44829011..44830774-chr15:44841931..44844429,2	MCF-7	breast:
2	chr15:44837165..44842769-chr15:44844512..44848405,4	MCF-7	breast:

Variant related genes	Relation type
EIF3J	TF binding region
ENSG00000179523	Chromatin interaction
ENSG00000104131	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10152710	0.94[EUR][1000 genomes]
rs1021800	0.94[EUR][1000 genomes]
rs10467977	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12324194	0.87[ASN][1000 genomes]
rs12324710	0.84[ASN][1000 genomes]
rs12591178	1.00[EUR][1000 genomes]
rs12591581	0.94[EUR][1000 genomes]
rs12591811	0.94[EUR][1000 genomes]
rs12592995	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12593125	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12593325	0.94[EUR][1000 genomes]
rs12593686	0.94[EUR][1000 genomes]
rs12593943	0.94[EUR][1000 genomes]
rs12594110	0.94[EUR][1000 genomes]
rs12594139	0.94[EUR][1000 genomes]
rs12594167	1.00[EUR][1000 genomes]
rs12594621	0.94[EUR][1000 genomes]
rs12594645	0.94[EUR][1000 genomes]
rs12594746	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12594905	0.87[ASN][1000 genomes]
rs12594910	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12595484	0.94[EUR][1000 genomes]
rs17551416	0.94[EUR][1000 genomes]
rs2055061	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2288341	0.94[EUR][1000 genomes]
rs2288342	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2303577	0.94[EUR][1000 genomes]
rs2303578	0.87[EUR][1000 genomes]
rs2412883	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2412909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433350	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2555353	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2556562	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2556566	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2556567	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28508235	0.94[EUR][1000 genomes]
rs28561508	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2899113	0.94[EUR][1000 genomes]
rs2899119	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35555389	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3784565	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3784567	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3809471	1.00[EUR][1000 genomes]
rs3816928	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3986142	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3986143	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4415978	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4477677	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4577056	1.00[EUR][1000 genomes]
rs57270586	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58956090	1.00[EUR][1000 genomes]
rs59230801	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59891213	0.83[ASN][1000 genomes]
rs59997416	0.94[EUR][1000 genomes]
rs60003667	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60238894	0.83[ASN][1000 genomes]
rs60399672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61185650	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61234123	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61258861	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61278540	0.94[EUR][1000 genomes]
rs61329003	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61501839	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7162671	0.94[EUR][1000 genomes]
rs7162802	0.94[EUR][1000 genomes]
rs7163287	0.99[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7163529	0.94[EUR][1000 genomes]
rs7164709	0.94[EUR][1000 genomes]
rs7165017	0.80[ASN][1000 genomes]
rs7166278	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7166945	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7167752	0.94[EUR][1000 genomes]
rs7167870	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7169333	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7170248	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7172106	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7175200	0.94[EUR][1000 genomes]
rs7178318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7179390	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7179894	0.94[EUR][1000 genomes]
rs7181772	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7183109	0.89[EUR][1000 genomes]
rs73417597	0.87[ASN][1000 genomes]
rs8023453	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8024623	0.94[EUR][1000 genomes]
rs8024805	0.94[EUR][1000 genomes]
rs8025727	0.94[EUR][1000 genomes]
rs8025876	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8025955	0.94[EUR][1000 genomes]
rs8026945	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8028509	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8032079	0.94[EUR][1000 genomes]
rs8037395	0.82[EUR][1000 genomes]
rs883943	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9672237	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9673085	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9806511	0.84[ASN][1000 genomes]
rs9806725	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44830400-44844000	Weak transcription	Lung	lung
2	chr15:44830400-44844400	Weak transcription	Spleen	Spleen
3	chr15:44830400-44848600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:44830400-44850200	Weak transcription	Aorta	Aorta
5	chr15:44830400-44855200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:44830400-44855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:44830800-44844400	Weak transcription	Colonic Mucosa	Colon
8	chr15:44831000-44844000	Weak transcription	Thymus	Thymus
9	chr15:44831000-44844400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:44831000-44844800	Weak transcription	Right Ventricle	heart
11	chr15:44831000-44856800	Weak transcription	Fetal Brain Male	brain
12	chr15:44833000-44844400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:44833600-44844800	Weak transcription	Fetal Lung	lung
14	chr15:44833800-44843200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:44833800-44843800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:44833800-44844000	Weak transcription	Placenta	Placenta
17	chr15:44833800-44844600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:44833800-44857200	Weak transcription	Small Intestine	intestine
19	chr15:44834000-44844000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:44834000-44844400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:44834200-44844600	Weak transcription	Brain Substantia Nigra	brain
22	chr15:44834200-44844800	Weak transcription	Fetal Kidney	kidney
23	chr15:44834400-44843200	Weak transcription	Fetal Intestine Large	intestine
24	chr15:44834400-44843400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:44834600-44843400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:44834600-44844400	Weak transcription	Fetal Brain Female	brain
27	chr15:44834600-44846200	Weak transcription	Brain Germinal Matrix	brain
28	chr15:44834800-44843200	Weak transcription	Dnd41	blood
29	chr15:44834800-44843200	Weak transcription	NHEK	skin
30	chr15:44835000-44844000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr15:44835000-44844800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:44835000-44847200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:44835200-44844800	Weak transcription	HepG2	liver
34	chr15:44835600-44843800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:44835600-44844600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr15:44835800-44844000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:44836000-44844800	Weak transcription	Ovary	ovary
38	chr15:44836600-44844000	Weak transcription	Gastric	stomach
39	chr15:44837400-44844000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:44838200-44843800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr15:44838200-44844000	Weak transcription	Esophagus	oesophagus
42	chr15:44838400-44847200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:44838400-44857200	Weak transcription	Stomach Mucosa	stomach
44	chr15:44838600-44842800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:44838600-44843000	Weak transcription	Primary B cells from cord blood	blood
46	chr15:44838600-44843400	Weak transcription	A549	lung
47	chr15:44838800-44842200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:44838800-44842200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr15:44838800-44843200	Weak transcription	Primary T cells from cord blood	blood
50	chr15:44838800-44843200	Weak transcription	Adipose Nuclei	Adipose

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