Variant report

Variant	rs61501839
Chromosome Location	chr15:44777906-44777907
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44767423..44770241-chr15:44775945..44778021,2	MCF-7	breast:
2	chr15:44776722..44779562-chr15:44780236..44783124,2	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10152710	0.94[EUR][1000 genomes]
rs1021800	0.94[EUR][1000 genomes]
rs10467977	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591178	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12591581	0.94[EUR][1000 genomes]
rs12591811	0.94[EUR][1000 genomes]
rs12592995	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593125	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593325	0.94[EUR][1000 genomes]
rs12593686	0.94[EUR][1000 genomes]
rs12593943	0.94[EUR][1000 genomes]
rs12594110	0.94[EUR][1000 genomes]
rs12594139	0.94[EUR][1000 genomes]
rs12594167	1.00[EUR][1000 genomes]
rs12594621	0.94[EUR][1000 genomes]
rs12594645	0.94[EUR][1000 genomes]
rs12594746	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12595484	0.94[EUR][1000 genomes]
rs17551416	0.94[EUR][1000 genomes]
rs2055061	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2288341	0.94[EUR][1000 genomes]
rs2288342	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2303577	0.94[EUR][1000 genomes]
rs2303578	0.87[EUR][1000 genomes]
rs2412883	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2412909	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2433350	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2555353	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2556562	0.92[ASN][1000 genomes]
rs2556566	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2556567	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28508235	0.94[EUR][1000 genomes]
rs28561508	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2899113	0.94[EUR][1000 genomes]
rs35555389	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784565	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3784567	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3809471	1.00[EUR][1000 genomes]
rs3816928	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3986142	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3986143	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4415978	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4477677	1.00[EUR][1000 genomes]
rs4577056	1.00[EUR][1000 genomes]
rs57270586	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58956090	1.00[EUR][1000 genomes]
rs59230801	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59997416	0.94[EUR][1000 genomes]
rs60003667	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60399672	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61185650	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61234123	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61258861	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61278540	0.94[EUR][1000 genomes]
rs61329003	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6493103	0.82[EUR][1000 genomes]
rs7162671	0.94[EUR][1000 genomes]
rs7162802	0.94[EUR][1000 genomes]
rs7163287	0.88[ASN][1000 genomes]
rs7163529	0.94[EUR][1000 genomes]
rs7164709	0.94[EUR][1000 genomes]
rs7166278	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7166945	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7167752	0.94[EUR][1000 genomes]
rs7167870	0.81[ASN][1000 genomes]
rs7169333	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7170248	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7172106	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175200	0.94[EUR][1000 genomes]
rs7178318	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7179894	0.94[EUR][1000 genomes]
rs7181772	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7183109	0.89[EUR][1000 genomes]
rs8023453	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024623	0.94[EUR][1000 genomes]
rs8024805	0.94[EUR][1000 genomes]
rs8025727	0.94[EUR][1000 genomes]
rs8025876	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8025955	0.94[EUR][1000 genomes]
rs8026945	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027036	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8028509	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8028907	0.82[EUR][1000 genomes]
rs8032079	0.94[EUR][1000 genomes]
rs8037395	0.82[EUR][1000 genomes]
rs883943	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9672237	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9673085	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9806725	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44721000-44828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:44733800-44779000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:44735600-44779400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:44740600-44779000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:44740600-44779000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:44740600-44795600	Weak transcription	Esophagus	oesophagus
7	chr15:44740600-44824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:44740800-44779000	Weak transcription	Aorta	Aorta
9	chr15:44740800-44779000	Weak transcription	Spleen	Spleen
10	chr15:44741000-44783800	Weak transcription	Right Ventricle	heart
11	chr15:44744800-44778400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:44750000-44827400	Weak transcription	Pancreas	Pancrea
13	chr15:44750200-44779000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:44750200-44828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:44750400-44782800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:44750600-44779000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:44750600-44781400	Weak transcription	A549	lung
18	chr15:44751000-44795400	Weak transcription	Stomach Mucosa	stomach
19	chr15:44754600-44779600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr15:44754600-44781400	Weak transcription	Brain Substantia Nigra	brain
21	chr15:44754600-44816200	Weak transcription	Brain Angular Gyrus	brain
22	chr15:44754800-44779400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr15:44756800-44779400	Weak transcription	K562	blood
24	chr15:44757000-44779400	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:44757000-44781400	Weak transcription	HSMMtube	muscle
26	chr15:44757000-44827400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr15:44757600-44779000	Weak transcription	Placenta	Placenta
28	chr15:44757800-44779600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:44761200-44781400	Weak transcription	NHLF	lung
30	chr15:44761400-44778800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:44761400-44778800	Weak transcription	NH-A	brain
32	chr15:44761400-44779000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:44761400-44779000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:44761400-44779000	Weak transcription	HUVEC	blood vessel
35	chr15:44761400-44781400	Weak transcription	HMEC	breast
36	chr15:44761400-44781400	Weak transcription	NHDF-Ad	bronchial
37	chr15:44761400-44781400	Weak transcription	Osteobl	bone
38	chr15:44761600-44779400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:44761600-44781000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:44761600-44781400	Weak transcription	NHEK	skin
41	chr15:44761600-44789800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:44763600-44779000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:44764000-44778800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr15:44764000-44779400	Weak transcription	Brain Germinal Matrix	brain
45	chr15:44764200-44779000	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:44764200-44779400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:44764600-44779000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr15:44764600-44779000	Weak transcription	Fetal Kidney	kidney
49	chr15:44764600-44779200	Weak transcription	Fetal Brain Female	brain
50	chr15:44764600-44779600	Weak transcription	Brain Anterior Caudate	brain

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