Variant report

Variant	rs8028907
Chromosome Location	chr15:44574649-44574650
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44572994..44575199-chr15:44578714..44581258,3	K562	blood:
2	chr15:44560203..44561819-chr15:44573473..44575592,2	K562	blood:

Variant related genes	Relation type
ENSG00000166734	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1021800	0.88[GIH][hapmap];0.88[EUR][1000 genomes]
rs10467977	0.82[EUR][1000 genomes]
rs11070426	0.88[GIH][hapmap]
rs12591178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12591581	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12591811	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12592995	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12593125	0.82[EUR][1000 genomes]
rs12593325	0.88[EUR][1000 genomes]
rs12593686	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12593943	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12594110	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[EUR][1000 genomes]
rs12594139	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12594167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12594621	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12594645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12594746	0.82[EUR][1000 genomes]
rs12595484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17551416	0.88[EUR][1000 genomes]
rs2055061	0.82[EUR][1000 genomes]
rs2288341	0.88[EUR][1000 genomes]
rs2412883	0.82[EUR][1000 genomes]
rs2433350	0.82[EUR][1000 genomes]
rs2555353	0.82[EUR][1000 genomes]
rs2556566	0.82[EUR][1000 genomes]
rs28508235	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28561508	0.82[EUR][1000 genomes]
rs2899113	0.88[EUR][1000 genomes]
rs35555389	0.82[EUR][1000 genomes]
rs3784565	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs3784567	0.82[EUR][1000 genomes]
rs3809471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs3816928	0.82[EUR][1000 genomes]
rs3986142	0.82[EUR][1000 genomes]
rs3986143	0.82[EUR][1000 genomes]
rs4415978	0.82[EUR][1000 genomes]
rs4477677	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4577056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4924746	0.84[ASN][1000 genomes]
rs57270586	0.82[EUR][1000 genomes]
rs58956090	0.82[EUR][1000 genomes]
rs59230801	0.82[EUR][1000 genomes]
rs59997416	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60003667	0.82[EUR][1000 genomes]
rs60399672	0.82[EUR][1000 genomes]
rs61185650	0.82[EUR][1000 genomes]
rs61234123	0.82[EUR][1000 genomes]
rs61258861	0.82[EUR][1000 genomes]
rs61278540	0.88[EUR][1000 genomes]
rs61329003	0.82[EUR][1000 genomes]
rs61501839	0.82[EUR][1000 genomes]
rs6493103	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes]
rs7162802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7163529	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7164709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7166278	0.82[EUR][1000 genomes]
rs7166945	0.82[EUR][1000 genomes]
rs7167752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7169333	0.82[EUR][1000 genomes]
rs7170248	0.82[EUR][1000 genomes]
rs7172106	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7175200	0.88[EUR][1000 genomes]
rs7178318	0.82[EUR][1000 genomes]
rs7179894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7181772	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7183109	0.83[EUR][1000 genomes]
rs8023453	1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes]
rs8024623	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8024805	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8025727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8025876	0.82[EUR][1000 genomes]
rs8025955	0.88[EUR][1000 genomes]
rs8026945	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs8028509	0.82[EUR][1000 genomes]
rs8032079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8037395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883943	0.82[EUR][1000 genomes]
rs9672237	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9673085	1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs9806725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv904176	chr15:44403988-44579854	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv2754388	chr15:44479709-44592847	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1044686	chr15:44489534-44697482	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv1043822	chr15:44491220-44686957	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	nsv1035386	chr15:44498905-44677174	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44568200-44579200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:44571800-44579200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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