Variant report

Variant	rs8025876
Chromosome Location	chr15:44805172-44805173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44803518..44806265-chr15:44822302..44825161,2	K562	blood:
2	chr15:44768699..44770255-chr15:44803080..44806001,2	K562	blood:
3	chr15:44805117..44807189-chr15:44810192..44812893,2	K562	blood:

Variant related genes	Relation type
ENSG00000137770	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs10152710	0.94[EUR][1000 genomes]
rs1021800	0.94[EUR][1000 genomes]
rs10467977	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12591178	1.00[EUR][1000 genomes]
rs12591581	0.94[EUR][1000 genomes]
rs12591811	0.94[EUR][1000 genomes]
rs12592995	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12593125	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12593325	0.94[EUR][1000 genomes]
rs12593686	0.94[EUR][1000 genomes]
rs12593943	0.94[EUR][1000 genomes]
rs12594110	0.94[EUR][1000 genomes]
rs12594139	0.94[EUR][1000 genomes]
rs12594167	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12594621	0.94[EUR][1000 genomes]
rs12594645	0.94[EUR][1000 genomes]
rs12594746	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12595484	0.94[EUR][1000 genomes]
rs17551416	0.94[EUR][1000 genomes]
rs2055061	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2288341	0.94[EUR][1000 genomes]
rs2288342	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2303577	0.94[EUR][1000 genomes]
rs2303578	0.87[EUR][1000 genomes]
rs2412883	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2412909	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2433350	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2555353	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2556562	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2556566	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2556567	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28508235	0.94[EUR][1000 genomes]
rs28561508	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2899113	0.94[EUR][1000 genomes]
rs2899119	0.84[AFR][1000 genomes]
rs35555389	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3784565	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3784567	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3809471	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3816928	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3986142	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3986143	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4415978	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4477677	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4577056	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57270586	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58956090	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59230801	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59997416	0.94[EUR][1000 genomes]
rs60003667	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60399672	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61185650	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61234123	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61258861	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61278540	0.94[EUR][1000 genomes]
rs61329003	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61501839	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493103	0.82[EUR][1000 genomes]
rs7162671	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7162802	0.94[EUR][1000 genomes]
rs7163287	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7163529	0.94[EUR][1000 genomes]
rs7164709	0.94[EUR][1000 genomes]
rs7166278	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7166945	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7167752	0.94[EUR][1000 genomes]
rs7167870	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7169333	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7170248	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172106	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7175200	0.94[EUR][1000 genomes]
rs7178318	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7179894	0.94[EUR][1000 genomes]
rs7181772	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7183109	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8023453	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8024623	0.94[EUR][1000 genomes]
rs8024805	0.94[EUR][1000 genomes]
rs8025727	0.94[EUR][1000 genomes]
rs8025955	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs8026945	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8027036	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8028509	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028907	0.82[EUR][1000 genomes]
rs8032079	0.94[EUR][1000 genomes]
rs8037395	0.82[EUR][1000 genomes]
rs883943	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9672237	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9673085	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9806725	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
7	nsv904180	chr15:44783700-44820054	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv569301	chr15:44797575-44814968	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44721000-44828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:44740600-44824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44750000-44827400	Weak transcription	Pancreas	Pancrea
4	chr15:44750200-44828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:44754600-44816200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:44757000-44827400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:44775800-44820200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:44778000-44827800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:44778000-44827800	Weak transcription	Psoas Muscle	Psoas
10	chr15:44779800-44813600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:44779800-44824200	Weak transcription	Gastric	stomach
12	chr15:44779800-44827800	Weak transcription	Aorta	Aorta
13	chr15:44783200-44819400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr15:44783200-44827800	Weak transcription	NHLF	lung
15	chr15:44783600-44828000	Weak transcription	HSMMtube	muscle
16	chr15:44783800-44816400	Weak transcription	HMEC	breast
17	chr15:44790400-44827200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:44790800-44807000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:44790800-44813600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:44790800-44827800	Weak transcription	Small Intestine	intestine
21	chr15:44791000-44812000	Weak transcription	Colonic Mucosa	Colon
22	chr15:44791000-44818600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:44791800-44826800	Weak transcription	Brain Germinal Matrix	brain
24	chr15:44795000-44820400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr15:44795200-44820200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:44795400-44809200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:44796000-44812400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:44796200-44807000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:44796200-44807000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:44796200-44811400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:44796200-44812600	Weak transcription	NH-A	brain
32	chr15:44796200-44813000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:44796200-44815200	Weak transcription	Right Ventricle	heart
34	chr15:44796200-44819000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:44796200-44827200	Weak transcription	K562	blood
36	chr15:44796200-44827800	Weak transcription	Brain Anterior Caudate	brain
37	chr15:44796200-44828000	Weak transcription	Brain Substantia Nigra	brain
38	chr15:44796400-44814200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:44796400-44814200	Weak transcription	NHEK	skin
40	chr15:44796400-44827800	Weak transcription	Esophagus	oesophagus
41	chr15:44796400-44827800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr15:44796600-44813600	Weak transcription	Colon Smooth Muscle	Colon
43	chr15:44797000-44811000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:44797000-44815200	Weak transcription	Ovary	ovary
45	chr15:44797000-44828000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr15:44797600-44807000	Weak transcription	GM12878-XiMat	blood
47	chr15:44797600-44814400	Weak transcription	Left Ventricle	heart
48	chr15:44797600-44815000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr15:44797600-44815200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr15:44798000-44806600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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