Variant report

Variant	rs7167870
Chromosome Location	chr15:44845545-44845546
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44828989..44830828-chr15:44845349..44847067,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104131	Chromatin interaction
ENSG00000179523	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10467977	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12592995	0.81[ASN][1000 genomes]
rs12593125	0.81[ASN][1000 genomes]
rs12594746	0.81[AMR][1000 genomes]
rs2288342	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2412883	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2412909	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2433350	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2555353	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2556562	0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2556566	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2556567	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28561508	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2899119	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35555389	0.80[AMR][1000 genomes]
rs3784565	0.92[AMR][1000 genomes]
rs3784567	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3816928	0.80[AMR][1000 genomes]
rs3986142	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3986143	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4415978	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs57270586	0.80[AMR][1000 genomes]
rs59230801	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60003667	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60399672	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61185650	0.85[AMR][1000 genomes]
rs61234123	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61258861	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61329003	0.80[AMR][1000 genomes]
rs61501839	0.81[ASN][1000 genomes]
rs7163287	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7166278	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7166945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7169333	0.88[AMR][1000 genomes]
rs7170248	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs7172106	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7178318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7181772	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8023453	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8025876	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs8026945	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8027036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8028509	0.88[AMR][1000 genomes]
rs883943	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9672237	0.92[AMR][1000 genomes]
rs9673085	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44830400-44848600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:44830400-44850200	Weak transcription	Aorta	Aorta
3	chr15:44830400-44855200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:44830400-44855200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:44831000-44856800	Weak transcription	Fetal Brain Male	brain
6	chr15:44833800-44857200	Weak transcription	Small Intestine	intestine
7	chr15:44834600-44846200	Weak transcription	Brain Germinal Matrix	brain
8	chr15:44835000-44847200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:44838400-44847200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:44838400-44857200	Weak transcription	Stomach Mucosa	stomach
11	chr15:44838800-44847200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:44838800-44849400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:44839000-44846800	Weak transcription	Fetal Heart	heart
14	chr15:44839000-44846800	Weak transcription	HSMMtube	muscle
15	chr15:44839000-44847000	Weak transcription	Brain Angular Gyrus	brain
16	chr15:44839600-44847200	Weak transcription	Psoas Muscle	Psoas
17	chr15:44840000-44856000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:44840200-44858000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr15:44840600-44855600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:44840600-44857000	Strong transcription	Hela-S3	cervix
21	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr15:44842200-44847200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:44842400-44856600	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:44842400-44857400	Weak transcription	Right Atrium	heart
25	chr15:44842600-44846000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:44842600-44846800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:44842800-44855800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:44842800-44856400	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:44842800-44857000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:44843000-44846000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr15:44843000-44846000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:44843000-44846200	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr15:44843000-44847200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:44843000-44856600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr15:44843000-44857200	Strong transcription	NH-A	brain
36	chr15:44843200-44846200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:44843200-44847000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr15:44843200-44847200	Strong transcription	Fetal Thymus	thymus
39	chr15:44843200-44847200	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:44843200-44850000	Strong transcription	NHEK	skin
41	chr15:44843200-44855200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:44843200-44856200	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr15:44843200-44857000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:44843200-44857000	Strong transcription	Dnd41	blood
45	chr15:44843200-44857400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:44843200-44857400	Strong transcription	Liver	Liver
47	chr15:44843200-44857400	Strong transcription	Fetal Intestine Large	intestine
48	chr15:44843200-44857600	Strong transcription	Adipose Nuclei	Adipose
49	chr15:44843200-44867800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:44843200-44868000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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