Variant report

Variant	rs59891213
Chromosome Location	chr15:44907098-44907099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44906083..44908785-chr15:44913996..44916959,2	MCF-7	breast:
2	chr15:44898335..44900574-chr15:44906493..44909246,2	K562	blood:

Variant related genes	Relation type
ENSG00000104133	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12324194	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12324710	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12591898	0.92[ASN][1000 genomes]
rs12594463	0.91[ASN][1000 genomes]
rs12594905	0.96[ASN][1000 genomes]
rs12594910	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2288342	0.85[ASN][1000 genomes]
rs2412909	0.83[ASN][1000 genomes]
rs58491010	0.92[ASN][1000 genomes]
rs60238894	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163287	0.82[ASN][1000 genomes]
rs7165017	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178318	0.80[ASN][1000 genomes]
rs7179390	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73417597	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027036	0.83[ASN][1000 genomes]
rs9806511	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1516	chr15:44896162-44941091	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44870000-44928800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:44871400-44907600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:44871400-44932200	Strong transcription	Fetal Muscle Trunk	muscle
7	chr15:44871600-44917800	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr15:44871800-44924400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:44871800-44925000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:44872000-44935600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:44872200-44923200	Strong transcription	Fetal Intestine Large	intestine
12	chr15:44872400-44934400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:44873000-44913400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:44874800-44928600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:44881800-44934600	Strong transcription	Liver	Liver
16	chr15:44882000-44908200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr15:44884000-44910000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:44886200-44917600	Strong transcription	Primary B cells from peripheral blood	blood
19	chr15:44889200-44909200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:44889400-44925600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:44890000-44954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:44891800-44930200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr15:44892200-44929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:44892400-44929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:44892600-44925200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:44893800-44925400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr15:44894000-44909800	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:44894000-44935600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr15:44894800-44908000	Strong transcription	Primary B cells from cord blood	blood
30	chr15:44895000-44908000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:44895000-44908200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr15:44895200-44909600	Strong transcription	Fetal Lung	lung
33	chr15:44896400-44924400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:44896600-44907600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:44897200-44939400	Weak transcription	Stomach Mucosa	stomach
36	chr15:44898200-44910800	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:44898800-44910200	Strong transcription	Fetal Thymus	thymus
38	chr15:44899400-44914000	Strong transcription	Fetal Muscle Leg	muscle
39	chr15:44900600-44943400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr15:44900800-44907200	Weak transcription	HepG2	liver
41	chr15:44900800-44915200	Weak transcription	Esophagus	oesophagus
42	chr15:44900800-44920600	Weak transcription	Fetal Brain Male	brain
43	chr15:44900800-44955000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr15:44901000-44911200	Weak transcription	NH-A	brain
45	chr15:44901000-44920800	Weak transcription	Fetal Heart	heart
46	chr15:44902200-44913200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr15:44902200-44914200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:44902400-44907800	Strong transcription	Left Ventricle	heart
49	chr15:44902400-44910000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr15:44902400-44930400	Strong transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links