Variant report

Variant	rs73417597
Chromosome Location	chr15:44892225-44892226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44891865..44893812-chr15:45005124..45008116,2	K562	blood:

Variant related genes	Relation type
ENSG00000166710	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10467977	0.81[ASN][1000 genomes]
rs12324194	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324710	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591508	0.86[EUR][1000 genomes]
rs12591898	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12594463	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12594905	1.00[ASN][1000 genomes]
rs12594910	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288342	0.89[ASN][1000 genomes]
rs2412883	0.82[ASN][1000 genomes]
rs2412909	0.87[ASN][1000 genomes]
rs2433350	0.80[ASN][1000 genomes]
rs2556562	0.80[ASN][1000 genomes]
rs28561508	0.83[ASN][1000 genomes]
rs3784567	0.80[ASN][1000 genomes]
rs3986142	0.82[ASN][1000 genomes]
rs3986143	0.82[ASN][1000 genomes]
rs58491010	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59891213	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60238894	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60399672	0.82[ASN][1000 genomes]
rs61234123	0.82[ASN][1000 genomes]
rs61258861	0.82[ASN][1000 genomes]
rs7163287	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7165017	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7166278	0.82[ASN][1000 genomes]
rs7166945	0.82[ASN][1000 genomes]
rs7178318	0.84[ASN][1000 genomes]
rs7179390	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027036	0.87[ASN][1000 genomes]
rs883943	0.82[ASN][1000 genomes]
rs9806511	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44858000-44900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:44858400-44897200	Strong transcription	Fetal Stomach	stomach
4	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:44867600-44900000	Weak transcription	Fetal Heart	heart
6	chr15:44870000-44928800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:44871400-44907600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:44871400-44932200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr15:44871600-44894000	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr15:44871600-44903200	Strong transcription	Adipose Nuclei	Adipose
12	chr15:44871600-44917800	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr15:44871800-44892800	Strong transcription	Osteobl	bone
14	chr15:44871800-44893200	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr15:44871800-44924400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:44871800-44925000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:44872000-44903600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:44872000-44935600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:44872200-44923200	Strong transcription	Fetal Intestine Large	intestine
20	chr15:44872400-44934400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:44873000-44913400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:44873800-44897600	Strong transcription	Fetal Muscle Leg	muscle
23	chr15:44873800-44901400	Strong transcription	Placenta	Placenta
24	chr15:44874400-44893000	Strong transcription	Stomach Smooth Muscle	stomach
25	chr15:44874400-44900800	Strong transcription	Left Ventricle	heart
26	chr15:44874400-44901000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:44874800-44928600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:44879800-44900200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:44880800-44896800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:44881800-44934600	Strong transcription	Liver	Liver
31	chr15:44882000-44908200	Strong transcription	Duodenum Mucosa	Duodenum
32	chr15:44882800-44904600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr15:44884000-44910000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:44885800-44900000	Weak transcription	Fetal Brain Male	brain
35	chr15:44886200-44917600	Strong transcription	Primary B cells from peripheral blood	blood
36	chr15:44886400-44892800	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:44886600-44893400	Strong transcription	Primary B cells from cord blood	blood
38	chr15:44887400-44892800	Strong transcription	Rectal Smooth Muscle	rectum
39	chr15:44887400-44893000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:44888200-44897800	Weak transcription	A549	lung
41	chr15:44888600-44895200	Weak transcription	Small Intestine	intestine
42	chr15:44888600-44898600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr15:44888600-44900000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:44888600-44900200	Weak transcription	Esophagus	oesophagus
45	chr15:44888600-44906000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr15:44889200-44895600	Weak transcription	Stomach Mucosa	stomach
47	chr15:44889200-44909200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:44889400-44925600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:44889600-44893600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:44890000-44892400	Weak transcription	Fetal Intestine Small	intestine

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