Variant report

Variant	rs58491010
Chromosome Location	chr15:44966175-44966176
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44955488..44957626-chr15:44964990..44966848,2	MCF-7	breast:
2	chr15:44963923..44966763-chr15:45005688..45008122,2	MCF-7	breast:
3	chr15:44958355..44963408-chr15:44963813..44966709,4	K562	blood:
4	chr15:44962435..44966243-chr15:45002253..45005199,5	MCF-7	breast:
5	chr15:44955090..44957174-chr15:44964859..44967319,2	MCF-7	breast:
6	chr15:44953988..44959855-chr15:44961562..44971881,15	K562	blood:
7	chr15:44965424..44967005-chr15:44968980..44970711,2	K562	blood:

Variant related genes	Relation type
ENSG00000229474	Chromatin interaction
ENSG00000104133	Chromatin interaction
ENSG00000166710	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12324194	0.90[ASN][1000 genomes]
rs12324710	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12591898	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12594463	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12594905	0.90[ASN][1000 genomes]
rs12594910	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57451506	0.84[AMR][1000 genomes]
rs59891213	0.92[ASN][1000 genomes]
rs60238894	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7165017	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7179390	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73417597	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9806511	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44956200-44968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:44959400-44967200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr15:44959400-44967200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr15:44959400-44967400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:44959400-44974600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr15:44959600-44967400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:44959600-44968600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:44959600-44969000	Enhancers	Primary T cells from cord blood	blood
9	chr15:44959600-44971400	Enhancers	Primary B cells from cord blood	blood
10	chr15:44959800-44968200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr15:44959800-44968400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:44960400-44967200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr15:44961600-44967400	Weak transcription	Spleen	Spleen
14	chr15:44962000-44967200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr15:44962000-44967200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr15:44962200-44969000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr15:44962600-44967200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:44962800-44967200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:44963400-44967200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:44963400-44968600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:44963400-44968600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:44964000-44969200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:44964400-44967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:44964800-44966200	Weak transcription	Fetal Thymus	thymus
25	chr15:44964800-44967200	Weak transcription	K562	blood
26	chr15:44964800-44968800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:44965800-44969200	Enhancers	Thymus	Thymus
28	chr15:44965800-44975800	Enhancers	Primary B cells from peripheral blood	blood
29	chr15:44966000-44967000	Weak transcription	GM12878-XiMat	blood

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