Variant report

Variant	rs13380093
Chromosome Location	chr15:44942202-44942203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44941409..44943647-chr15:44951100..44953837,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10162700	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12324005	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12324515	0.85[MKK][hapmap]
rs12595838	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12911238	1.00[AMR][1000 genomes]
rs16966424	1.00[ASW][hapmap]
rs1720711	1.00[AMR][1000 genomes]
rs28566474	1.00[AMR][1000 genomes]
rs9972459	0.85[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:44890000-44954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:44900600-44943400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:44900800-44955000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:44906200-44943600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:44907800-44943200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:44909400-44943600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:44916200-44947000	Weak transcription	Esophagus	oesophagus
11	chr15:44918000-44952800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr15:44921600-44943400	Weak transcription	Fetal Heart	heart
13	chr15:44922800-44943600	Weak transcription	Gastric	stomach
14	chr15:44923000-44942400	Weak transcription	Right Ventricle	heart
15	chr15:44925400-44947400	Weak transcription	HSMMtube	muscle
16	chr15:44926400-44952800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:44930200-44947000	Weak transcription	A549	lung
18	chr15:44930400-44943600	Weak transcription	HepG2	liver
19	chr15:44935800-44950200	Strong transcription	Primary T cells from cord blood	blood
20	chr15:44936000-44943600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:44936400-44951600	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr15:44936800-44953000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:44937000-44949800	Strong transcription	Fetal Lung	lung
24	chr15:44937000-44953000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:44937400-44947000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:44937400-44949800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr15:44937400-44952000	Strong transcription	Fetal Thymus	thymus
28	chr15:44937400-44952800	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:44937400-44953000	Strong transcription	Duodenum Mucosa	Duodenum
30	chr15:44937800-44944600	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:44937800-44952200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:44938000-44944600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:44938000-44950200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr15:44938000-44951800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:44938000-44952000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:44938000-44952000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:44938000-44952200	Strong transcription	Fetal Intestine Large	intestine
38	chr15:44938000-44952800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:44938000-44952800	Strong transcription	Fetal Muscle Leg	muscle
40	chr15:44938200-44944800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:44938200-44949000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:44938200-44949200	Strong transcription	Brain Anterior Caudate	brain
43	chr15:44938200-44949800	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:44938200-44951800	Strong transcription	Liver	Liver
45	chr15:44938400-44942800	Strong transcription	Left Ventricle	heart
46	chr15:44938400-44943200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:44938400-44943600	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr15:44938400-44943800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:44938400-44944600	Strong transcription	Thymus	Thymus
50	chr15:44938400-44944800	Strong transcription	Placenta	Placenta

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