Variant report

Variant	rs9972459
Chromosome Location	chr15:44913420-44913421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44911239..44913616-chr15:45019732..45022719,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185880	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12324005	0.85[MKK][hapmap]
rs12324515	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13380093	0.85[MKK][hapmap]
rs13380361	1.00[MKK][hapmap]
rs1901526	1.00[AFR][1000 genomes]
rs871923	1.00[LWK][hapmap];0.85[MKK][hapmap]
rs9972451	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
2	nsv1516	chr15:44896162-44941091	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44842000-44951600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:44867400-44954600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44870000-44928800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:44871200-44951200	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:44871400-44932200	Strong transcription	Fetal Muscle Trunk	muscle
6	chr15:44871600-44917800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr15:44871800-44924400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:44871800-44925000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:44872000-44935600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:44872200-44923200	Strong transcription	Fetal Intestine Large	intestine
11	chr15:44872400-44934400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:44874800-44928600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:44881800-44934600	Strong transcription	Liver	Liver
14	chr15:44886200-44917600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr15:44889400-44925600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:44890000-44954800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:44891800-44930200	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr15:44892200-44929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:44892400-44929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:44892600-44925200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:44893800-44925400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:44894000-44935600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr15:44896400-44924400	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr15:44897200-44939400	Weak transcription	Stomach Mucosa	stomach
25	chr15:44899400-44914000	Strong transcription	Fetal Muscle Leg	muscle
26	chr15:44900600-44943400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:44900800-44915200	Weak transcription	Esophagus	oesophagus
28	chr15:44900800-44920600	Weak transcription	Fetal Brain Male	brain
29	chr15:44900800-44955000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr15:44901000-44920800	Weak transcription	Fetal Heart	heart
31	chr15:44902200-44914200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:44902400-44930400	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:44902600-44925800	Strong transcription	Placenta	Placenta
34	chr15:44903000-44925200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:44903000-44934400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:44904200-44925400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:44904200-44925600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:44904400-44925200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:44904600-44916000	Strong transcription	Hela-S3	cervix
40	chr15:44904600-44921600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr15:44904800-44929400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:44905000-44918400	Strong transcription	Primary T cells from cord blood	blood
43	chr15:44905000-44930800	Strong transcription	Adipose Nuclei	Adipose
44	chr15:44905600-44915600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:44906200-44943600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr15:44906600-44938200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr15:44906800-44915200	Weak transcription	Gastric	stomach
48	chr15:44906800-44915200	Weak transcription	Pancreas	Pancrea
49	chr15:44906800-44917000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:44906800-44917000	Weak transcription	Ovary	ovary

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