Variant report

Variant rs2562358
Chromosome Location chr5:16902701-16902702
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16895000-16903000 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr5:16896000-16912400 Weak transcription Esophagus oesophagus
3 chr5:16897000-16902800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
4 chr5:16898000-16902800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
5 chr5:16898000-16902800 Weak transcription HSMM muscle
6 chr5:16898200-16902800 Weak transcription Colon Smooth Muscle Colon
7 chr5:16898200-16903000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr5:16898200-16903400 Weak transcription Placenta Placenta
9 chr5:16898200-16903800 Weak transcription Osteobl bone
10 chr5:16898200-16904000 Weak transcription NHLF lung
11 chr5:16898200-16906200 Weak transcription Psoas Muscle Psoas
12 chr5:16898200-16912600 Weak transcription NH-A brain
13 chr5:16898400-16903000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr5:16898400-16903000 Weak transcription Fetal Stomach stomach
15 chr5:16898400-16903000 Weak transcription Ovary ovary
16 chr5:16898400-16903800 Weak transcription Small Intestine intestine
17 chr5:16898400-16904600 Weak transcription Fetal Intestine Small intestine
18 chr5:16899400-16907000 Enhancers Pancreas Pancrea
19 chr5:16899800-16905600 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr5:16899800-16910000 Weak transcription HUVEC blood vessel
21 chr5:16899800-16910800 Weak transcription HMEC breast
22 chr5:16900400-16905400 Enhancers Fetal Muscle Leg muscle
23 chr5:16900600-16903800 Weak transcription NHDF-Ad bronchial
24 chr5:16900600-16903800 Weak transcription NHEK skin
25 chr5:16900800-16903200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
26 chr5:16900800-16903200 Weak transcription Cortex derived primary cultured neurospheres brain
27 chr5:16901200-16904400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
28 chr5:16901200-16904800 Enhancers Fetal Muscle Trunk muscle
29 chr5:16901200-16906400 Enhancers Gastric stomach
30 chr5:16901200-16907000 Enhancers Lung lung
31 chr5:16901400-16903800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr5:16901400-16906400 Enhancers Fetal Adrenal Gland Adrenal Gland
33 chr5:16901400-16907600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr5:16901600-16903000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr5:16901600-16903000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr5:16901600-16903000 Weak transcription Fetal Lung lung
37 chr5:16901600-16905200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr5:16901600-16906000 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr5:16901600-16907600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr5:16901600-16909400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr5:16901800-16902800 Weak transcription Stomach Mucosa stomach
42 chr5:16902000-16903200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr5:16902000-16903600 Weak transcription H9 Cell Line embryonic stem cell
44 chr5:16902000-16903600 Weak transcription Duodenum Mucosa Duodenum
45 chr5:16902000-16903800 Enhancers A549 lung
46 chr5:16902000-16903800 Weak transcription Hela-S3 cervix
47 chr5:16902000-16904000 Weak transcription H1 Cell Line embryonic stem cell
48 chr5:16902000-16905200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr5:16902000-16905400 Weak transcription Rectal Mucosa Donor 29 rectum
50 chr5:16902000-16905400 Weak transcription Spleen Spleen

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