Variant report

Variant	rs2562460
Chromosome Location	chr19:21617072-21617073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:21614539..21617498-chr19:21618431..21621735,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11881619	1.00[ASN][1000 genomes]
rs11881648	1.00[ASN][1000 genomes]
rs2088759	0.84[EUR][1000 genomes]
rs2173726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2359147	0.84[EUR][1000 genomes]
rs2359148	0.84[EUR][1000 genomes]
rs2562412	0.84[EUR][1000 genomes]
rs2650772	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2650811	0.84[EUR][1000 genomes]
rs2968071	0.84[EUR][1000 genomes]
rs57144387	1.00[ASN][1000 genomes]
rs57470621	1.00[ASN][1000 genomes]
rs57785081	1.00[ASN][1000 genomes]
rs58878959	1.00[ASN][1000 genomes]
rs60355060	1.00[ASN][1000 genomes]
rs7249229	0.84[EUR][1000 genomes]
rs73534731	1.00[ASN][1000 genomes]
rs73543179	1.00[ASN][1000 genomes]
rs73546772	1.00[ASN][1000 genomes]
rs73546788	1.00[ASN][1000 genomes]
rs73546793	1.00[ASN][1000 genomes]
rs73548623	1.00[ASN][1000 genomes]
rs73548627	1.00[ASN][1000 genomes]
rs73548629	1.00[ASN][1000 genomes]
rs73548644	1.00[ASN][1000 genomes]
rs73549716	0.84[EUR][1000 genomes]
rs73551246	1.00[ASN][1000 genomes]
rs73551256	1.00[ASN][1000 genomes]
rs73551258	1.00[ASN][1000 genomes]
rs8112786	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21607600-21630200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:21613400-21618600	ZNF genes & repeats	Liver	Liver
3	chr19:21616600-21617800	ZNF genes & repeats	Ovary	ovary
4	chr19:21616800-21617400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links