Variant report

Variant	rs2562567
Chromosome Location	chr5:36592351-36592352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36240759..36242858-chr5:36591808..36593698,2	MCF-7	breast:
2	chr5:36588011..36589772-chr5:36591606..36593865,2	K562	blood:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction
ENSG00000242292	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13162772	0.86[EUR][1000 genomes]
rs13178449	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13186061	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1549687	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1549688	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1549689	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1972737	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1972738	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2731914	0.89[ASN][1000 genomes]
rs2731916	0.89[ASN][1000 genomes]
rs2731917	0.89[ASN][1000 genomes]
rs34000615	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35016936	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35678434	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4421130	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56011137	0.84[ASN][1000 genomes]
rs71588446	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7445592	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881025	chr5:36575021-36613053	Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36591200-36593400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:36591200-36606200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:36591400-36592600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:36591800-36593400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:36591800-36596000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:36591800-36596200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:36591800-36596200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:36591800-36596600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:36591800-36597000	Weak transcription	Brain Anterior Caudate	brain
10	chr5:36591800-36597800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:36591800-36597800	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:36591800-36597800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:36591800-36598000	Weak transcription	Brain Substantia Nigra	brain
14	chr5:36592000-36593200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:36592000-36596000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:36592000-36596000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:36592000-36596000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr5:36592000-36597800	Weak transcription	Brain Angular Gyrus	brain
19	chr5:36592200-36596000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr5:36592200-36596200	Weak transcription	H1 Cell Line	embryonic stem cell

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