Variant report

Variant	rs56011137
Chromosome Location	chr5:36573735-36573736
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13162772	1.00[AFR][1000 genomes]
rs13165565	1.00[AFR][1000 genomes]
rs13178449	0.94[ASN][1000 genomes]
rs13186061	0.94[ASN][1000 genomes]
rs1549687	0.94[ASN][1000 genomes]
rs1549688	0.94[ASN][1000 genomes]
rs1549689	0.94[ASN][1000 genomes]
rs1972737	0.94[ASN][1000 genomes]
rs1972738	0.94[ASN][1000 genomes]
rs2562567	0.84[ASN][1000 genomes]
rs2731914	0.94[ASN][1000 genomes]
rs2731916	0.94[ASN][1000 genomes]
rs2731917	0.94[ASN][1000 genomes]
rs34000615	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs35016936	0.94[ASN][1000 genomes]
rs35678434	0.86[ASN][1000 genomes]
rs4421130	0.94[ASN][1000 genomes]
rs71588446	0.94[ASN][1000 genomes]
rs7445592	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36570000-36575600	Weak transcription	Aorta	Aorta
2	chr5:36570200-36574000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:36571000-36575200	Weak transcription	Fetal Heart	heart
4	chr5:36571200-36584000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:36571200-36584000	Weak transcription	Brain Substantia Nigra	brain
6	chr5:36571600-36577200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:36571800-36575200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:36572200-36575200	Weak transcription	Left Ventricle	heart
9	chr5:36572200-36575600	Weak transcription	Ovary	ovary
10	chr5:36572600-36574600	Enhancers	Osteobl	bone
11	chr5:36572800-36575200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:36572800-36575600	Enhancers	HSMM	muscle
13	chr5:36572800-36576200	Enhancers	HMEC	breast
14	chr5:36573000-36575400	Enhancers	NH-A	brain
15	chr5:36573000-36577400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:36573200-36573800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:36573200-36574000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:36573200-36574000	Enhancers	NHDF-Ad	bronchial
19	chr5:36573200-36574200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:36573200-36575200	Enhancers	HUVEC	blood vessel
21	chr5:36573200-36575400	Enhancers	NHEK	skin
22	chr5:36573200-36575800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:36573200-36575800	Enhancers	HSMMtube	muscle
24	chr5:36573200-36577400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:36573400-36573800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:36573400-36573800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:36573400-36573800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:36573400-36573800	Enhancers	NHLF	lung
29	chr5:36573400-36574000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:36573400-36574000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:36573400-36574000	Enhancers	Hela-S3	cervix
32	chr5:36573600-36573800	Enhancers	HUES6 Cell Line	embryonic stem cell

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