Variant report

Variant	rs2569520
Chromosome Location	chr19:51472550-51472551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr19:51472281-51473209	MCF-7	breast:	n/a	n/a
2	SP1	chr19:51472349-51473301	HCT-116	colon:	n/a	chr19:51472849-51472861 chr19:51472851-51472860 chr19:51472850-51472859 chr19:51472857-51472870 chr19:51472849-51472861
3	EGR1	chr19:51471460-51473336	HCT-116	colon:	n/a	chr19:51471756-51471766 chr19:51472108-51472130 chr19:51472132-51472142 chr19:51472132-51472145 chr19:51471757-51471770 chr19:51472132-51472145
4	FOSL2	chr19:51472429-51473061	MCF-7	breast:	n/a	chr19:51472732-51472742 chr19:51472731-51472743 chr19:51472732-51472742 chr19:51472732-51472741 chr19:51472732-51472742 chr19:51472732-51472742
5	FOSL2	chr19:51472498-51473070	MCF-7	breast:	n/a	chr19:51472732-51472742 chr19:51472731-51472743 chr19:51472732-51472742 chr19:51472732-51472741 chr19:51472732-51472742 chr19:51472732-51472742
6	NR2F2	chr19:51471830-51473188	MCF-7	breast:	n/a	n/a
7	JUND	chr19:51472373-51473181	HCT-116	colon:	n/a	chr19:51472732-51472742 chr19:51472731-51472743 chr19:51472732-51472742 chr19:51472732-51472741 chr19:51472732-51472742 chr19:51472731-51472742 chr19:51472732-51472742
8	JUND	chr19:51472473-51473072	MCF-7	breast:	n/a	chr19:51472732-51472742 chr19:51472731-51472743 chr19:51472732-51472742 chr19:51472732-51472741 chr19:51472732-51472742 chr19:51472731-51472742 chr19:51472732-51472742
9	POLR2A	chr19:51472468-51472971	HCT-116	colon:	n/a	n/a
10	EP300	chr19:51472473-51473143	MCF-7	breast:	n/a	n/a
11	JUND	chr19:51472362-51473182	MCF-7	breast:	n/a	chr19:51472732-51472742 chr19:51472731-51472743 chr19:51472732-51472742 chr19:51472732-51472741 chr19:51472732-51472742 chr19:51472731-51472742 chr19:51472732-51472742
12	MAX	chr19:51472473-51473209	MCF-7	breast:	n/a	n/a
13	GATA3	chr19:51472331-51473229	MCF-7	breast:	n/a	chr19:51472887-51472896 chr19:51472734-51472743
14	NR2F2	chr19:51472379-51473107	MCF-7	breast:	n/a	n/a
15	GATA3	chr19:51472377-51473077	MCF-7	breast:	n/a	chr19:51472887-51472896 chr19:51472734-51472743
16	TCF12	chr19:51472382-51473088	MCF-7	breast:	n/a	chr19:51473063-51473073
17	POLR2A	chr19:51472418-51473087	HCT-116	colon:	n/a	n/a
18	HDAC2	chr19:51472417-51473117	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
KLK6	TF binding region

rs_ID	r²[population]
rs1722539	1.00[EUR][1000 genomes]
rs268884	1.00[EUR][1000 genomes]
rs268885	1.00[EUR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51467600-51472800	Weak transcription	Spleen	Spleen
2	chr19:51469600-51472600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr19:51470000-51473400	Enhancers	Esophagus	oesophagus
4	chr19:51470000-51474000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:51471200-51472600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr19:51471200-51472800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr19:51471200-51473000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr19:51471200-51473200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr19:51471200-51473200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr19:51471200-51473200	Active TSS	Brain Angular Gyrus	brain
11	chr19:51471200-51473200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr19:51471200-51473800	Enhancers	NHEK	skin
13	chr19:51471200-51474000	Enhancers	HMEC	breast
14	chr19:51471200-51474800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:51471400-51472600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr19:51471400-51472600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr19:51471400-51472800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr19:51471600-51472600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr19:51471600-51472600	Active TSS	Brain Anterior Caudate	brain
20	chr19:51471600-51473000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
21	chr19:51471600-51473000	Active TSS	Brain Substantia Nigra	brain
22	chr19:51471600-51473200	Active TSS	Brain Cingulate Gyrus	brain
23	chr19:51471600-51474800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr19:51471800-51472600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr19:51471800-51472600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr19:51471800-51473200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr19:51471800-51473200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:51471800-51473200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr19:51472000-51472800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
30	chr19:51472000-51472800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr19:51472000-51473200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr19:51472400-51472600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
33	chr19:51472400-51472600	Bivalent Enhancer	HepG2	liver

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