Variant report

Variant	rs268884
Chromosome Location	chr19:51480446-51480447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:51473357..51476193-chr19:51479340..51481047,2	K562	blood:
2	chr19:51432732..51437222-chr19:51477627..51480793,4	MCF-7	breast:
3	chr19:51470577..51472254-chr19:51478017..51480801,2	K562	blood:
4	chr19:51474799..51477178-chr19:51477869..51480485,2	MCF-7	breast:
5	chr19:51478311..51481235-chr19:51486537..51488716,3	MCF-7	breast:
6	chr19:51470577..51473158-chr19:51478017..51482058,3	K562	blood:
7	chr19:51480144..51482461-chr19:51505463..51507645,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129455	Chromatin interaction
ENSG00000169035	Chromatin interaction
ENSG00000267879	Chromatin interaction
ENSG00000269741	Chromatin interaction
ENSG00000167755	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1722539	1.00[EUR][1000 genomes]
rs2569520	1.00[EUR][1000 genomes]
rs268885	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064207	chr19:51474525-51497278	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51472800-51482200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr19:51473000-51480600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:51473200-51480800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr19:51473200-51482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:51474800-51482200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr19:51479400-51480800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr19:51479400-51481600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:51479400-51482200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr19:51479600-51480800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr19:51479600-51480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:51479600-51481000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr19:51479600-51481400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr19:51479600-51482000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:51479600-51482000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr19:51479600-51482000	Weak transcription	NHEK	skin
16	chr19:51479600-51482200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr19:51479600-51482400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr19:51479600-51482400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr19:51479600-51482400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr19:51479600-51482800	Weak transcription	Esophagus	oesophagus
21	chr19:51480000-51481200	Weak transcription	HMEC	breast
22	chr19:51480000-51482000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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