Variant report
| Variant | rs2573086 |
|---|---|
| Chromosome Location | chr2:178836430-178836431 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:178834171..178836909-chr2:178857022..178858774,2 | K562 | blood: | |
| 2 | chr2:178825449..178829644-chr2:178831703..178836480,4 | K562 | blood: | |
| 3 | chr2:178823421..178826085-chr2:178834912..178837926,3 | K562 | blood: | |
| 4 | chr2:178681561..178684546-chr2:178836153..178838637,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1370657 | 0.84[AFR][1000 genomes] |
| rs1438052 | 0.89[AFR][1000 genomes] |
| rs1898588 | 0.84[AFR][1000 genomes] |
| rs2695095 | 0.89[AFR][1000 genomes] |
| rs2695096 | 0.89[AFR][1000 genomes] |
| rs2695106 | 0.89[AFR][1000 genomes] |
| rs2695114 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2695720 | 0.89[AFR][1000 genomes] |
| rs2695721 | 0.89[AFR][1000 genomes] |
| rs2695727 | 0.84[AFR][1000 genomes] |
| rs2695759 | 0.84[AFR][1000 genomes] |
| rs34556327 | 1.00[AMR][1000 genomes] |
| rs56189218 | 0.84[AFR][1000 genomes] |
| rs56230218 | 0.84[AFR][1000 genomes] |
| rs56300810 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6433700 | 0.82[AFR][1000 genomes] |
| rs6712039 | 0.84[AFR][1000 genomes] |
| rs6752913 | 0.84[AFR][1000 genomes] |
| rs73972662 | 0.84[AFR][1000 genomes] |
| rs73972663 | 0.84[AFR][1000 genomes] |
| rs73972667 | 0.84[AFR][1000 genomes] |
| rs73972668 | 0.84[AFR][1000 genomes] |
| rs73972669 | 0.84[AFR][1000 genomes] |
| rs9283485 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533377 | chr2:178718801-178963463 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007579 | chr2:178729330-178890946 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv875451 | chr2:178748294-178953409 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv998304 | chr2:178756380-178924378 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv536056 | chr2:178756380-178924378 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:178834600-178837600 | Enhancers | HepG2 | liver |
| 2 | chr2:178835600-178836800 | Enhancers | Stomach Mucosa | stomach |
| 3 | chr2:178836400-178836600 | Active TSS | Liver | Liver |
