Variant report

Variant	rs2695720
Chromosome Location	chr2:178734005-178734006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:90226490..90227129-chr2:178733958..178734724,2	HCT-116	colon:
2	chr2:178733289..178735124-chr2:178738141..178740067,2	K562	blood:
3	chr2:178733624..178735578-chr2:178738141..178740013,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10930813	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs1370657	0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1438052	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1898588	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2573086	0.89[AFR][1000 genomes]
rs2695095	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2695096	1.00[ASW][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2695106	1.00[AFR][1000 genomes]
rs2695114	0.88[AFR][1000 genomes]
rs2695721	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695723	1.00[YRI][hapmap]
rs2695725	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs2695727	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2695759	0.90[AFR][1000 genomes]
rs56189218	0.95[AFR][1000 genomes]
rs56230218	0.95[AFR][1000 genomes]
rs56300810	0.88[AFR][1000 genomes]
rs6433700	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6712039	0.88[YRI][hapmap];0.95[AFR][1000 genomes]
rs6713949	1.00[AMR][1000 genomes]
rs6752913	0.86[ASW][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes]
rs6756270	1.00[AMR][1000 genomes]
rs73972662	0.95[AFR][1000 genomes]
rs73972663	0.95[AFR][1000 genomes]
rs73972665	0.88[AFR][1000 genomes]
rs73972667	0.95[AFR][1000 genomes]
rs73972668	0.95[AFR][1000 genomes]
rs73972669	0.95[AFR][1000 genomes]
rs7570577	0.87[ASW][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs9283485	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs934806	0.87[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178733600-178736200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr2:178733800-178734400	Enhancers	Psoas Muscle	Psoas
3	chr2:178734000-178735400	Enhancers	Skeletal Muscle Male	skeletal muscle

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