Variant report

Variant	rs7570577
Chromosome Location	chr2:178698263-178698264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10930813	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1370657	1.00[AMR][1000 genomes]
rs1438052	0.87[ASW][hapmap];0.85[MKK][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs1469971	0.91[YRI][hapmap];0.94[AFR][1000 genomes]
rs1898588	0.87[ASW][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs2695095	0.87[ASW][hapmap];0.80[YRI][hapmap]
rs2695096	0.87[ASW][hapmap];0.80[YRI][hapmap]
rs2695720	0.87[ASW][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs2695721	0.87[ASW][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs2695723	0.80[YRI][hapmap]
rs2695725	0.87[ASW][hapmap];0.85[MKK][hapmap];0.80[YRI][hapmap]
rs2695727	0.80[YRI][hapmap]
rs6433700	0.80[YRI][hapmap]
rs6713949	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6756270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9283485	1.00[AMR][1000 genomes]
rs934806	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv3053	chr2:178690640-178735132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178696400-178705200	Weak transcription	Psoas Muscle	Psoas
2	chr2:178696800-178698400	Enhancers	Fetal Intestine Large	intestine
3	chr2:178697000-178698400	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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