Variant report

Variant	rs73972665
Chromosome Location	chr2:178883073-178883074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1370657	0.84[AFR][1000 genomes]
rs1438052	0.88[AFR][1000 genomes]
rs1898588	0.84[AFR][1000 genomes]
rs2695095	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695096	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695106	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2695720	0.88[AFR][1000 genomes]
rs2695721	0.88[AFR][1000 genomes]
rs2695727	1.00[AMR][1000 genomes]
rs2695759	1.00[AMR][1000 genomes]
rs56189218	0.93[AFR][1000 genomes]
rs56230218	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433700	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6712039	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6752913	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73972662	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73972663	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73972667	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73972668	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73972669	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9283485	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1007579	chr2:178729330-178890946	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv875451	chr2:178748294-178953409	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv998304	chr2:178756380-178924378	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536056	chr2:178756380-178924378	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178873600-178889600	Weak transcription	A549	lung
2	chr2:178882800-178883200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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