Variant report

Variant	rs2576385
Chromosome Location	chr3:100613985-100613986
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100611635..100615364-chr3:100616570..100618813,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1036468	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17338729	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17339226	0.88[CHB][hapmap]
rs1836985	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs2245370	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes]
rs2252229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2576367	0.81[CEU][hapmap]
rs2576370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2576384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576389	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs2576390	0.81[CEU][hapmap]
rs2713749	0.88[CHB][hapmap]
rs2713750	0.81[CEU][hapmap]
rs2713759	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2713762	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs2713794	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28605965	0.90[ASN][1000 genomes]
rs6774218	0.88[CHB][hapmap]
rs73143029	0.82[ASN][1000 genomes]
rs7609734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641631	0.88[CHB][hapmap]
rs7646218	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9826284	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100594400-100618200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:100594600-100616800	Weak transcription	Ovary	ovary
3	chr3:100599600-100645400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:100599800-100618200	Weak transcription	Fetal Lung	lung
5	chr3:100602200-100616800	Weak transcription	NHDF-Ad	bronchial
6	chr3:100604200-100617000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:100610400-100617600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:100610600-100617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:100610600-100619200	Weak transcription	Fetal Intestine Large	intestine
10	chr3:100610800-100617000	Weak transcription	HSMM	muscle
11	chr3:100612000-100617000	Weak transcription	Hela-S3	cervix
12	chr3:100612000-100622800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:100612200-100632200	Weak transcription	Fetal Stomach	stomach
14	chr3:100612600-100617200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:100612800-100614400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:100612800-100616200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:100612800-100617000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:100613000-100616800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:100613000-100616800	Weak transcription	HUVEC	blood vessel
20	chr3:100613000-100616800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:100613000-100616800	Weak transcription	Osteobl	bone
22	chr3:100613000-100617400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr3:100613000-100618200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:100613200-100617000	Weak transcription	HSMMtube	muscle
25	chr3:100613400-100616800	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:100613400-100618600	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links