Variant report

Variant	rs73143029
Chromosome Location	chr3:100631031-100631032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1036468	0.87[ASN][1000 genomes]
rs17338729	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1836985	0.82[ASN][1000 genomes]
rs2252229	1.00[ASN][1000 genomes]
rs2576370	0.97[ASN][1000 genomes]
rs2576384	0.82[ASN][1000 genomes]
rs2576385	0.82[ASN][1000 genomes]
rs2713794	0.90[ASN][1000 genomes]
rs28605965	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7609734	0.90[ASN][1000 genomes]
rs7646218	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100599600-100645400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr3:100612200-100632200	Weak transcription	Fetal Stomach	stomach
3	chr3:100617600-100641000	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:100617800-100641000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:100621600-100633400	Weak transcription	HSMMtube	muscle
6	chr3:100622000-100631800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:100623200-100631800	Weak transcription	NHDF-Ad	bronchial
8	chr3:100629800-100631800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:100630200-100631400	Weak transcription	HSMM	muscle
10	chr3:100630200-100634200	Weak transcription	NHLF	lung
11	chr3:100630200-100673600	Weak transcription	Ovary	ovary
12	chr3:100630400-100631400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:100630400-100631800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:100630400-100631800	Weak transcription	Osteobl	bone
15	chr3:100630400-100647000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:100630600-100631600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:100631000-100633400	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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