Variant report

Variant	rs2577359
Chromosome Location	chr10:118027799-118027800
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117890330..117892125-chr10:118026371..118028506,2	MCF-7	breast:
2	chr10:117840390..117842036-chr10:118027784..118029716,2	MCF-7	breast:
3	chr10:117464567..117466683-chr10:118027769..118030068,2	MCF-7	breast:
4	chr10:117197738..117199762-chr10:118026573..118029063,2	MCF-7	breast:
5	chr10:118014061..118016773-chr10:118027145..118029342,2	K562	blood:
6	chr10:118011033..118013216-chr10:118027087..118029971,2	MCF-7	breast:
7	chr10:118000898..118003799-chr10:118027189..118029098,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2532690	1.00[AMR][1000 genomes]
rs2532691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532693	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532694	1.00[AMR][1000 genomes]
rs2532695	1.00[AMR][1000 genomes]
rs2577353	1.00[AMR][1000 genomes]
rs2577364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4285797	1.00[AMR][1000 genomes]
rs4309072	1.00[AMR][1000 genomes]
rs4333937	1.00[AMR][1000 genomes]
rs4341452	1.00[AMR][1000 genomes]
rs4421670	1.00[AMR][1000 genomes]
rs4525139	1.00[AMR][1000 genomes]
rs4525140	1.00[AMR][1000 genomes]
rs4579854	1.00[AMR][1000 genomes]
rs7079449	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118019200-118028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118020600-118030200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:118021800-118028800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:118022200-118028200	Strong transcription	Liver	Liver
5	chr10:118022200-118028400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:118023000-118028800	Weak transcription	Fetal Kidney	kidney
7	chr10:118023400-118030400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:118023800-118030200	Weak transcription	HSMMtube	muscle
9	chr10:118024400-118028000	Strong transcription	HSMM	muscle
10	chr10:118025000-118028000	Strong transcription	Fetal Muscle Trunk	muscle
11	chr10:118026600-118030400	Weak transcription	Brain Angular Gyrus	brain
12	chr10:118027400-118029200	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:118027400-118029800	Weak transcription	Fetal Stomach	stomach
14	chr10:118027400-118030000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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