Variant report

Variant	rs4309072
Chromosome Location	chr10:118019017-118019018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2532672	1.00[YRI][hapmap]
rs2532690	1.00[AMR][1000 genomes]
rs2532691	1.00[AMR][1000 genomes]
rs2532693	1.00[AMR][1000 genomes]
rs2532694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2532695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2577353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2577359	1.00[AMR][1000 genomes]
rs2577364	1.00[AMR][1000 genomes]
rs4285797	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4309071	1.00[AFR][1000 genomes]
rs4333937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4341452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4421670	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4525139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4525140	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4579854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7079449	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1043339	chr10:118010822-118025492	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118014600-118024000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:118014800-118022200	Weak transcription	Liver	Liver
3	chr10:118015200-118019200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:118015800-118022400	Weak transcription	Fetal Kidney	kidney
5	chr10:118016000-118020600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:118016000-118023000	Weak transcription	HSMMtube	muscle
7	chr10:118016200-118019800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:118016200-118024400	Weak transcription	HSMM	muscle
9	chr10:118017000-118020400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:118017200-118020200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:118017200-118022200	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:118017600-118022200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:118017600-118022200	Weak transcription	Fetal Stomach	stomach
14	chr10:118017600-118022400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:118017600-118024800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:118017600-118025000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:118018000-118019400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:118019000-118019200	Enhancers	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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