Variant report

Variant	rs2577479
Chromosome Location	chr5:128256587-128256588
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2526181	0.95[ASN][1000 genomes]
rs2526182	0.95[ASN][1000 genomes]
rs2526183	0.95[ASN][1000 genomes]
rs2526184	0.95[ASN][1000 genomes]
rs2526186	0.95[ASN][1000 genomes]
rs2526187	0.95[ASN][1000 genomes]
rs2526188	0.95[ASN][1000 genomes]
rs2526259	0.95[ASN][1000 genomes]
rs2577394	0.85[ASN][1000 genomes]
rs2577476	0.95[ASN][1000 genomes]
rs2577478	0.95[ASN][1000 genomes]
rs2577486	0.95[ASN][1000 genomes]
rs2577491	0.95[ASN][1000 genomes]
rs2577493	0.95[ASN][1000 genomes]
rs2577494	0.95[ASN][1000 genomes]
rs2577497	0.95[ASN][1000 genomes]
rs2577498	0.95[ASN][1000 genomes]
rs4068750	0.95[ASN][1000 genomes]
rs4068751	0.95[ASN][1000 genomes]
rs4068752	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2577479	SLC27A6	cis	Nerve Tibial	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128253400-128256600	Weak transcription	Left Ventricle	heart
2	chr5:128255600-128256800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:128255600-128257000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:128255600-128257000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:128255600-128257000	Enhancers	HUVEC	blood vessel
6	chr5:128255600-128257000	Enhancers	NHEK	skin
7	chr5:128255800-128256600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:128255800-128257000	Enhancers	HMEC	breast
9	chr5:128256200-128256800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:128256200-128257000	Enhancers	Fetal Heart	heart
11	chr5:128256200-128257000	Enhancers	HSMM	muscle
12	chr5:128256400-128256800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:128256400-128256800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr5:128256400-128256800	Enhancers	Hela-S3	cervix
15	chr5:128256400-128257000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:128256400-128257000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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