Variant report

Variant	rs2577497
Chromosome Location	chr5:128264973-128264974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10035817	0.80[EUR][1000 genomes]
rs10035842	0.84[EUR][1000 genomes]
rs10060488	0.84[EUR][1000 genomes]
rs12659481	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17678264	0.83[EUR][1000 genomes]
rs2428667	0.87[EUR][1000 genomes]
rs2428668	0.87[EUR][1000 genomes]
rs2438184	0.87[EUR][1000 genomes]
rs2522375	0.82[EUR][1000 genomes]
rs2526173	0.87[EUR][1000 genomes]
rs2526174	0.87[EUR][1000 genomes]
rs2526175	0.87[EUR][1000 genomes]
rs2526176	0.87[EUR][1000 genomes]
rs2526178	0.88[EUR][1000 genomes]
rs2526179	0.88[EUR][1000 genomes]
rs2526181	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526182	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526183	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526184	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526186	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526187	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526188	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2526259	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577394	0.89[ASN][1000 genomes]
rs2577475	0.85[EUR][1000 genomes]
rs2577476	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577478	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577479	0.95[ASN][1000 genomes]
rs2577482	0.88[EUR][1000 genomes]
rs2577483	0.88[EUR][1000 genomes]
rs2577485	0.86[EUR][1000 genomes]
rs2577486	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577491	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577493	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577494	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577498	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577505	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3851461	0.83[EUR][1000 genomes]
rs3863171	0.81[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs3863172	0.85[EUR][1000 genomes]
rs4068750	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4068751	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4068752	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882654	0.84[EUR][1000 genomes]
rs756455	0.88[EUR][1000 genomes]
rs7710764	0.84[EUR][1000 genomes]
rs9327499	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128261800-128265200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:128262400-128265000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:128262400-128265000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:128262400-128265200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:128264600-128265400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links