Variant report
Variant | rs2577505 |
---|---|
Chromosome Location | chr5:128269273-128269274 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:128268677..128271311-chr5:128429524..128431668,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000066583 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10035842 | 0.81[EUR][1000 genomes] |
rs10060488 | 0.81[EUR][1000 genomes] |
rs12659481 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs17678264 | 0.80[EUR][1000 genomes] |
rs2428667 | 0.84[EUR][1000 genomes] |
rs2428668 | 0.84[EUR][1000 genomes] |
rs2438184 | 0.84[EUR][1000 genomes] |
rs2526173 | 0.84[EUR][1000 genomes] |
rs2526174 | 0.84[EUR][1000 genomes] |
rs2526175 | 0.84[EUR][1000 genomes] |
rs2526176 | 0.84[EUR][1000 genomes] |
rs2526178 | 0.85[EUR][1000 genomes] |
rs2526179 | 0.85[EUR][1000 genomes] |
rs2526181 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2526182 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2526183 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2526184 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2526186 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2526187 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2526188 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2526259 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2577475 | 0.82[EUR][1000 genomes] |
rs2577476 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2577478 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2577482 | 0.85[EUR][1000 genomes] |
rs2577483 | 0.85[EUR][1000 genomes] |
rs2577485 | 0.83[EUR][1000 genomes] |
rs2577486 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2577491 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2577493 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2577494 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2577497 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs2577498 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs3851461 | 0.80[EUR][1000 genomes] |
rs3863171 | 0.81[EUR][1000 genomes] |
rs3863172 | 0.82[EUR][1000 genomes] |
rs4068750 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4068751 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs4068752 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs6882654 | 0.81[EUR][1000 genomes] |
rs756455 | 0.85[EUR][1000 genomes] |
rs7710764 | 0.81[EUR][1000 genomes] |
rs9327499 | 0.81[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv462443 | chr5:128172808-128298437 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
2 | nsv599700 | chr5:128172808-128298437 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
3 | nsv882837 | chr5:128200502-128287228 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv882838 | chr5:128203439-128287228 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv882839 | chr5:128205828-128390167 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv882840 | chr5:128205828-128428962 | Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:128268000-128269400 | Enhancers | Ovary | ovary |
2 | chr5:128269200-128270400 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |