Variant report

Variant	rs2577576
Chromosome Location	chr15:72832939-72832940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72824709..72826756-chr15:72830157..72833591,3	K562	blood:
2	chr15:72831411..72834028-chr15:72837250..72840303,3	K562	blood:
3	chr15:72821404..72823570-chr15:72831025..72833392,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12324257	1.00[AMR][1000 genomes]
rs13329347	1.00[AMR][1000 genomes]
rs2706453	0.94[AFR][1000 genomes]
rs28396210	1.00[AMR][1000 genomes]
rs28418777	1.00[AMR][1000 genomes]
rs28451211	1.00[AMR][1000 genomes]
rs28451625	1.00[AMR][1000 genomes]
rs28463280	1.00[AMR][1000 genomes]
rs28483407	1.00[AMR][1000 genomes]
rs28575504	1.00[AMR][1000 genomes]
rs28575961	1.00[AMR][1000 genomes]
rs28635032	1.00[AMR][1000 genomes]
rs28667912	1.00[AMR][1000 genomes]
rs28687667	1.00[AMR][1000 genomes]
rs74021506	1.00[AMR][1000 genomes]
rs74022835	1.00[AMR][1000 genomes]
rs74024328	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv569947	chr15:72800853-72878772	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1054626	chr15:72811402-72867502	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv569948	chr15:72811402-72878772	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
11	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
12	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
13	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72794200-72833200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:72796400-72833000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:72796400-72833000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:72796800-72855400	Weak transcription	Esophagus	oesophagus
5	chr15:72797000-72833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:72798200-72833000	Weak transcription	Gastric	stomach
7	chr15:72805600-72848200	Weak transcription	Fetal Brain Male	brain
8	chr15:72806400-72833000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:72806600-72846800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:72807600-72833000	Weak transcription	Fetal Intestine Large	intestine
11	chr15:72809000-72833000	Weak transcription	Osteobl	bone
12	chr15:72809000-72855400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr15:72809400-72833000	Weak transcription	Adipose Nuclei	Adipose
14	chr15:72809600-72833000	Weak transcription	HSMMtube	muscle
15	chr15:72811400-72833200	Weak transcription	Right Ventricle	heart
16	chr15:72814400-72847000	Weak transcription	Ovary	ovary
17	chr15:72814800-72833000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:72814800-72859200	Weak transcription	Brain Angular Gyrus	brain
19	chr15:72815600-72837200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:72815600-72838200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:72815800-72833000	Weak transcription	Primary B cells from cord blood	blood
22	chr15:72815800-72837200	Weak transcription	HepG2	liver
23	chr15:72816200-72833000	Weak transcription	Fetal Thymus	thymus
24	chr15:72817600-72833000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:72818200-72837200	Weak transcription	A549	lung
26	chr15:72819600-72837000	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:72819800-72833200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:72820800-72833200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:72821800-72833000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:72821800-72833000	Weak transcription	Fetal Intestine Small	intestine
31	chr15:72821800-72833000	Weak transcription	Fetal Stomach	stomach
32	chr15:72821800-72833000	Weak transcription	Left Ventricle	heart
33	chr15:72826200-72840200	Weak transcription	Hela-S3	cervix
34	chr15:72826800-72837000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr15:72826800-72837200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:72827200-72837600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:72827800-72846800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:72828000-72837000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr15:72828600-72833400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:72828600-72869800	Weak transcription	Aorta	Aorta
41	chr15:72828800-72833000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:72829000-72833000	Weak transcription	Thymus	Thymus
43	chr15:72829200-72833000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:72829200-72833000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:72829200-72833000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:72829200-72833200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:72829200-72837200	Weak transcription	Small Intestine	intestine
48	chr15:72829200-72880800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr15:72829400-72833200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr15:72829400-72837000	Weak transcription	Primary T cells from cord blood	blood

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