Variant report

Variant	rs2706453
Chromosome Location	chr15:72781437-72781438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72765013..72768991-chr15:72777549..72785933,11	MCF-7	breast:
2	chr15:72779498..72781540-chr15:72782619..72785012,4	K562	blood:
3	chr15:72773245..72779445-chr15:72780758..72788014,8	K562	blood:

Variant related genes	Relation type
ENSG00000166233	Chromatin interaction
ENSG00000261423	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2577576	0.94[AFR][1000 genomes]
rs28445620	1.00[AMR][1000 genomes]
rs28479635	1.00[AMR][1000 genomes]
rs28562241	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72768400-72785400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:72768400-72793400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:72769200-72792000	Weak transcription	Fetal Kidney	kidney
4	chr15:72769600-72797000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:72769600-72832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:72769800-72782800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:72769800-72805200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:72770000-72786600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:72770200-72788600	Weak transcription	Brain Germinal Matrix	brain
10	chr15:72770400-72782600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:72771400-72782800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:72771400-72792000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:72771600-72826000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:72772000-72781600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:72772000-72782400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:72772000-72792000	Weak transcription	Placenta	Placenta
17	chr15:72772200-72781800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:72772200-72791800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:72772200-72794000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:72772400-72791600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr15:72772600-72820800	Weak transcription	Thymus	Thymus
22	chr15:72772800-72782200	Weak transcription	Fetal Brain Male	brain
23	chr15:72773000-72817200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:72773000-72819600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr15:72774000-72782600	Weak transcription	Spleen	Spleen
26	chr15:72774000-72785000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:72774000-72796000	Weak transcription	Fetal Stomach	stomach
28	chr15:72774200-72784000	Weak transcription	Brain Substantia Nigra	brain
29	chr15:72774200-72786600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:72774200-72794000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:72775000-72782200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:72775600-72788400	Weak transcription	Aorta	Aorta
33	chr15:72775600-72832800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:72775800-72785200	Weak transcription	Brain Angular Gyrus	brain
35	chr15:72775800-72788400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:72775800-72796000	Weak transcription	Esophagus	oesophagus
37	chr15:72776000-72781800	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:72776000-72782400	Weak transcription	Primary T cells from cord blood	blood
39	chr15:72776000-72782800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:72776000-72792000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:72777400-72786000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr15:72777400-72790000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:72777600-72783600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr15:72777800-72792000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:72778000-72782800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:72778000-72783400	Enhancers	Liver	Liver
47	chr15:72778400-72782200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:72778600-72781600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:72778600-72783000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr15:72778600-72786600	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links