Variant report

Variant	rs2579861
Chromosome Location	chr8:130401875-130401876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130396550..130399217-chr8:130400172..130403294,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1583246	0.95[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2016932	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2250954	0.83[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2568406	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2568408	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2568409	0.89[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2568410	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2568411	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2568414	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2579862	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2579868	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2579875	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2579878	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2630511	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2630515	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2630516	0.95[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2630520	0.80[GIH][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap]
rs2630521	0.87[JPT][hapmap]
rs2719194	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2719205	0.81[JPT][hapmap]
rs2719207	0.83[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2719209	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2719222	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs7006807	0.90[MEX][hapmap];0.89[TSI][hapmap]
rs7827080	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs7827184	0.89[CHB][hapmap];0.81[CHD][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap]
rs7827366	0.89[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130394800-130411800	Strong transcription	K562	blood
2	chr8:130400600-130402000	Enhancers	Brain Hippocampus Middle	brain
3	chr8:130400600-130403200	Enhancers	Brain Germinal Matrix	brain
4	chr8:130400800-130402400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:130400800-130402400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:130401000-130402000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:130401400-130402600	Enhancers	Dnd41	blood
8	chr8:130401800-130402800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:130401800-130405600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr8:130401800-130405800	Weak transcription	Primary monocytes fromperipheralblood	blood

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