Variant report

Variant	rs2719207
Chromosome Location	chr8:130407683-130407684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130406605..130408222-chr8:130415923..130417816,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1583246	0.90[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs2016932	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2250954	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2568406	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2568408	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2568409	0.94[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2568410	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2568411	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2568414	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2579861	0.83[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2579862	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2579868	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2579875	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2579878	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2630511	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2630515	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2630516	0.90[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs2630520	0.84[CEU][hapmap];0.87[JPT][hapmap]
rs2630521	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs2719194	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs2719205	0.82[JPT][hapmap]
rs2719209	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2719222	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs7006807	0.94[CEU][hapmap]
rs7827080	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs7827184	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs7827366	0.84[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130394800-130411800	Strong transcription	K562	blood
2	chr8:130407000-130411800	Weak transcription	Dnd41	blood
3	chr8:130407400-130408000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links