Variant report

Variant	rs2579895
Chromosome Location	chr8:35416030-35416031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1371153	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1439161	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2579880	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2579882	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2579884	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2579894	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2589329	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2589330	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2589332	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2589344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2589345	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2589349	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2589350	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2589745	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2589748	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2589756	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2589757	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2589759	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024397	chr8:35296922-35424277	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv1799001	chr8:35414987-35422131	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35402600-35418400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:35403000-35416400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:35404200-35416400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:35405400-35416200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:35407800-35416600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:35408200-35418200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:35408400-35416200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:35410200-35418000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:35413000-35416400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:35414600-35418200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:35414800-35424200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:35415000-35423400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:35415000-35431000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:35415200-35416600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:35416000-35419200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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