Variant report

Variant	rs2581588
Chromosome Location	chr8:2128133-2128134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11992155	0.83[ASN][1000 genomes]
rs2016028	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2581598	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2581600	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2581601	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2618806	0.85[ASN][1000 genomes]
rs2618817	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2618820	0.86[ASN][1000 genomes]
rs2927952	0.87[ASN][1000 genomes]
rs2956890	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4991102	0.84[ASN][1000 genomes]
rs893870	0.83[ASN][1000 genomes]
rs893871	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2118600-2128800	Weak transcription	Spleen	Spleen
2	chr8:2119400-2128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:2119400-2130400	Weak transcription	Pancreas	Pancrea
4	chr8:2121600-2128800	Weak transcription	Right Atrium	heart
5	chr8:2122800-2129600	Weak transcription	Right Ventricle	heart
6	chr8:2123200-2130600	Weak transcription	Psoas Muscle	Psoas
7	chr8:2126400-2128200	Weak transcription	Fetal Brain Male	brain
8	chr8:2126600-2128800	Weak transcription	Fetal Thymus	thymus
9	chr8:2127000-2130800	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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