Variant report

Variant	rs893870
Chromosome Location	chr8:2122519-2122520
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11992155	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17064834	0.82[AFR][1000 genomes]
rs2581588	0.83[ASN][1000 genomes]
rs2618806	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2927952	0.96[ASN][1000 genomes]
rs4991102	0.99[ASN][1000 genomes]
rs893871	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2118600-2128800	Weak transcription	Spleen	Spleen
2	chr8:2119400-2128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:2119400-2130400	Weak transcription	Pancreas	Pancrea
4	chr8:2121600-2128800	Weak transcription	Right Atrium	heart
5	chr8:2122000-2123400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr8:2122200-2122800	Enhancers	Fetal Thymus	thymus
7	chr8:2122400-2122600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:2122400-2122600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:2122400-2122600	Enhancers	Left Ventricle	heart
10	chr8:2122400-2122600	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr8:2122400-2122800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr8:2122400-2122800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr8:2122400-2122800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:2122400-2122800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:2122400-2122800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:2122400-2122800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:2122400-2122800	Bivalent Enhancer	Fetal Stomach	stomach
18	chr8:2122400-2122800	Enhancers	Right Ventricle	heart
19	chr8:2122400-2123200	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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