Variant report

Variant	rs2581983
Chromosome Location	chr4:22611058-22611059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2439468	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2581948	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2581949	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2581950	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2581951	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2581952	0.83[EUR][1000 genomes]
rs2581986	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2581987	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2581990	0.88[EUR][1000 genomes]
rs2581997	0.80[ASN][1000 genomes]
rs2618932	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2618934	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2618935	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2618939	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618940	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618942	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1007053	chr4:22573534-22658117	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv967733	chr4:22595783-22611675	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22608200-22611600	Enhancers	Fetal Thymus	thymus
2	chr4:22608200-22612000	Enhancers	Primary T cells from cord blood	blood
3	chr4:22608200-22612200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr4:22608600-22611400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr4:22609000-22612000	Weak transcription	Liver	Liver
6	chr4:22609600-22615000	Weak transcription	Fetal Heart	heart
7	chr4:22610600-22611800	Weak transcription	Primary T helper cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links