Variant report

Variant	rs2618934
Chromosome Location	chr4:22626964-22626965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2439468	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2581948	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2581949	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2581950	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2581951	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2581965	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2581983	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2581986	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2581987	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2581997	0.80[ASN][1000 genomes]
rs2618932	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2618933	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2618935	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2618939	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2618940	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1007053	chr4:22573534-22658117	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22625600-22628600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:22626400-22627400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:22626400-22628000	Enhancers	Adipose Nuclei	Adipose
4	chr4:22626400-22628200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:22626600-22627400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:22626600-22627600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:22626600-22628200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:22626800-22627000	Enhancers	Brain Germinal Matrix	brain
9	chr4:22626800-22627200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:22626800-22627200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:22626800-22627200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:22626800-22627200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:22626800-22627200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:22626800-22627400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:22626800-22627400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:22626800-22627400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:22626800-22627400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:22626800-22627400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:22626800-22627400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr4:22626800-22627400	Enhancers	HSMMtube	muscle
21	chr4:22626800-22627600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr4:22626800-22627600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:22626800-22627800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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