Variant report

Variant	rs2618933
Chromosome Location	chr4:22632945-22632946
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2439468	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2581948	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2581949	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2581950	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2581951	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2581965	0.80[EUR][1000 genomes]
rs2581987	0.80[AMR][1000 genomes]
rs2618932	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2618934	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2618935	0.80[AMR][1000 genomes]
rs2618939	0.80[AMR][1000 genomes]
rs2618940	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1007053	chr4:22573534-22658117	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22631800-22633000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:22632000-22636200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:22632200-22636000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:22632800-22633200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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