Variant report

Variant	rs2581992
Chromosome Location	chr4:22678188-22678189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12501294	0.87[ASN][1000 genomes]
rs1478964	0.87[ASN][1000 genomes]
rs1842097	0.82[EUR][1000 genomes]
rs1843485	0.85[ASN][1000 genomes]
rs2127177	0.83[ASN][1000 genomes]
rs2250074	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2581966	0.81[EUR][1000 genomes]
rs2581991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618924	0.80[EUR][1000 genomes]
rs2618945	0.80[EUR][1000 genomes]
rs2618949	0.80[EUR][1000 genomes]
rs2618952	0.81[EUR][1000 genomes]
rs2618960	0.87[ASN][1000 genomes]
rs2629975	0.87[ASN][1000 genomes]
rs3101799	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22670400-22678600	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr4:22670600-22681800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:22674000-22678800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr4:22674600-22679000	Enhancers	Primary T cells from cord blood	blood
5	chr4:22675200-22679400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:22675800-22678800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr4:22676000-22678600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr4:22676200-22678600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr4:22676400-22678400	Enhancers	Primary B cells from peripheral blood	blood
10	chr4:22677200-22678600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr4:22677200-22681000	Weak transcription	Fetal Lung	lung
12	chr4:22677200-22682200	Enhancers	Colon Smooth Muscle	Colon
13	chr4:22677400-22678400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr4:22677400-22678800	Enhancers	Fetal Thymus	thymus
15	chr4:22677600-22678600	Enhancers	Fetal Intestine Large	intestine
16	chr4:22677800-22678600	Enhancers	Primary B cells from cord blood	blood
17	chr4:22677800-22678600	Enhancers	Thymus	Thymus
18	chr4:22678000-22678800	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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