Variant report

Variant	rs2618945
Chromosome Location	chr4:22676293-22676294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1842097	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2250074	0.83[EUR][1000 genomes]
rs2581966	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2581982	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2581992	0.80[EUR][1000 genomes]
rs2581993	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2618924	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618928	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2618929	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2618947	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618948	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618949	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618952	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2629973	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22670400-22678600	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr4:22670600-22681800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:22674000-22678800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr4:22674600-22676800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr4:22674600-22679000	Enhancers	Primary T cells from cord blood	blood
6	chr4:22675000-22677400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:22675000-22677800	Weak transcription	Primary B cells from cord blood	blood
8	chr4:22675200-22676400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:22675200-22679400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:22675800-22677800	Weak transcription	Thymus	Thymus
11	chr4:22675800-22678800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr4:22676000-22676400	Enhancers	Colon Smooth Muscle	Colon
13	chr4:22676000-22677400	Weak transcription	Fetal Thymus	thymus
14	chr4:22676000-22678600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr4:22676200-22676400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr4:22676200-22678600	Enhancers	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links