Variant report

Variant	rs2581993
Chromosome Location	chr4:22686680-22686681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1842097	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2581966	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2581982	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2618924	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2618928	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2618929	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2618945	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2618947	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2618948	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2618949	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2618952	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2629973	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22678600-22687000	Weak transcription	Thymus	Thymus
2	chr4:22678800-22687200	Weak transcription	Fetal Thymus	thymus
3	chr4:22682200-22687000	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:22682200-22687200	Weak transcription	HSMM	muscle
5	chr4:22682200-22694600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:22682400-22692200	Weak transcription	Liver	Liver
7	chr4:22682600-22689400	Weak transcription	Primary T cells from cord blood	blood
8	chr4:22682600-22691000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr4:22682800-22686800	Weak transcription	HSMMtube	muscle
10	chr4:22685200-22693600	Weak transcription	Fetal Intestine Large	intestine
11	chr4:22686200-22692600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:22686600-22688200	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links