Variant report

Variant	rs2582307
Chromosome Location	chr11:15918862-15918863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10734237	0.90[AMR][1000 genomes]
rs55903409	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56316446	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60531578	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73430909	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs982989	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15910400-15922800	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15914800-15922200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:15915000-15923200	Weak transcription	Pancreas	Pancrea
4	chr11:15915000-15929200	Weak transcription	Esophagus	oesophagus
5	chr11:15915200-15919000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:15915200-15919000	Weak transcription	HMEC	breast
7	chr11:15915200-15922800	Weak transcription	Left Ventricle	heart
8	chr11:15915200-15923000	Weak transcription	Gastric	stomach
9	chr11:15915200-15923000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:15915200-15924800	Weak transcription	NHEK	skin
11	chr11:15915400-15923000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:15915400-15923600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:15915800-15919200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:15915800-15928400	Weak transcription	Fetal Kidney	kidney
15	chr11:15916000-15919000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:15916000-15919000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:15916000-15919000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:15916000-15919400	Weak transcription	HSMMtube	muscle
19	chr11:15916000-15922400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:15916000-15922600	Weak transcription	Fetal Heart	heart
21	chr11:15916000-15922600	Weak transcription	Ovary	ovary
22	chr11:15916200-15919400	Weak transcription	Spleen	Spleen
23	chr11:15916200-15922400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:15916600-15919200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:15916800-15921200	Enhancers	Fetal Muscle Leg	muscle
26	chr11:15917200-15920800	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr11:15917200-15920800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:15917600-15919800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr11:15917600-15920800	Enhancers	Psoas Muscle	Psoas
30	chr11:15917800-15919000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:15917800-15923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:15918200-15919000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr11:15918200-15919800	Enhancers	HSMM	muscle
34	chr11:15918400-15919000	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr11:15918400-15919200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:15918400-15920000	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr11:15918400-15923000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:15918400-15928000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:15918600-15919000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr11:15918800-15919200	Bivalent Enhancer	Fetal Stomach	stomach
41	chr11:15918800-15919600	Enhancers	NH-A	brain
42	chr11:15918800-15919800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:15918800-15919800	Enhancers	Hela-S3	cervix
44	chr11:15918800-15920200	Enhancers	Osteobl	bone

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