Variant report

Variant	rs60531578
Chromosome Location	chr11:15894499-15894500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2582307	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4757372	0.86[AMR][1000 genomes]
rs55903409	0.83[ASN][1000 genomes]
rs56316446	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73430909	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15890400-15897000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15891800-15894600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:15892000-15894800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:15892600-15894600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:15893000-15896000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:15893200-15895800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:15893600-15914000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:15894000-15895800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:15894000-15897000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:15894000-15897600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:15894200-15897800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:15894400-15895200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:15894400-15897000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:15894400-15897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links