Variant report
| Variant | rs2582357 |
|---|---|
| Chromosome Location | chr4:68654774-68654775 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1020177 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1031001 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1155222 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1440736 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1440737 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2255844 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2582358 | 0.96[ASN][1000 genomes] |
| rs2582359 | 0.93[ASN][1000 genomes] |
| rs2582360 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2582362 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2627243 | 0.87[EUR][1000 genomes] |
| rs2627244 | 0.81[EUR][1000 genomes] |
| rs2627245 | 0.81[EUR][1000 genomes] |
| rs2630484 | 0.93[ASN][1000 genomes] |
| rs2630485 | 0.81[EUR][1000 genomes] |
| rs2630486 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2630487 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2630491 | 0.87[EUR][1000 genomes] |
| rs2711135 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2711136 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2711156 | 0.81[EUR][1000 genomes] |
| rs2711159 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879214 | chr4:68389841-68789778 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv829960 | chr4:68649237-68809629 | Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv3446954 | chr4:68653705-68709553 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3405472 | chr4:68653857-68654955 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:68651400-68668800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr4:68652800-68675000 | Weak transcription | Gastric | stomach |
