Variant report

Variant	rs2582359
Chromosome Location	chr4:68653714-68653715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1020177	0.93[ASN][1000 genomes]
rs1031001	0.93[ASN][1000 genomes]
rs1155222	0.93[ASN][1000 genomes]
rs1440736	0.93[ASN][1000 genomes]
rs1440737	0.93[ASN][1000 genomes]
rs2255844	0.93[ASN][1000 genomes]
rs2582357	0.93[ASN][1000 genomes]
rs2582358	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2582360	0.93[ASN][1000 genomes]
rs2582362	0.93[ASN][1000 genomes]
rs2630484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2630486	0.93[ASN][1000 genomes]
rs2630487	0.93[ASN][1000 genomes]
rs2711135	0.87[ASN][1000 genomes]
rs2711136	0.82[ASN][1000 genomes]
rs2711159	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879214	chr4:68389841-68789778	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv829960	chr4:68649237-68809629	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3446954	chr4:68653705-68709553	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:68648600-68654200	Weak transcription	Primary T cells from cord blood	blood
2	chr4:68651400-68668800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:68652200-68654000	Weak transcription	HMEC	breast
4	chr4:68652800-68675000	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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