Variant report

Variant	rs2585079
Chromosome Location	chr15:57273171-57273172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57265601..57267263-chr15:57271593..57273612,2	K562	blood:
2	chr15:57269633..57272065-chr15:57273062..57274627,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs2243575	1.00[AMR][1000 genomes]
rs2435894	1.00[AMR][1000 genomes]
rs2435898	0.94[AFR][1000 genomes]
rs2435899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2435901	0.81[AFR][1000 genomes]
rs2435904	0.81[AFR][1000 genomes]
rs2439923	0.81[AFR][1000 genomes]
rs2439924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2566841	0.88[AFR][1000 genomes]
rs2566847	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2566852	0.81[AFR][1000 genomes]
rs2585074	0.88[AFR][1000 genomes]
rs2585085	1.00[AMR][1000 genomes]
rs2585095	1.00[AMR][1000 genomes]
rs2585101	1.00[AMR][1000 genomes]
rs2585109	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2585113	1.00[AMR][1000 genomes]
rs2593245	1.00[AMR][1000 genomes]
rs2593247	0.93[AFR][1000 genomes]
rs2593253	0.93[AFR][1000 genomes]
rs2615234	1.00[AMR][1000 genomes]
rs2615239	1.00[AMR][1000 genomes]
rs2615245	0.93[AFR][1000 genomes]
rs2615247	1.00[AMR][1000 genomes]
rs2615248	0.87[AFR][1000 genomes]
rs2703581	1.00[AMR][1000 genomes]
rs2703585	1.00[AMR][1000 genomes]
rs2703603	0.81[AFR][1000 genomes]
rs2703606	0.81[AFR][1000 genomes]
rs2703611	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2703615	0.87[AFR][1000 genomes]
rs2703617	1.00[AMR][1000 genomes]
rs2703621	1.00[AMR][1000 genomes]
rs2703622	0.81[AFR][1000 genomes]
rs2733173	0.81[AFR][1000 genomes]
rs2733175	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2733184	1.00[AMR][1000 genomes]
rs2733308	1.00[AMR][1000 genomes]
rs2733338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2920271	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57256800-57277200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:57257200-57274600	Weak transcription	Adipose Nuclei	Adipose
3	chr15:57261200-57279000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:57261400-57275000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:57262200-57280000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:57263800-57276000	Weak transcription	Lung	lung
7	chr15:57264800-57275000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:57264800-57275200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:57265400-57277000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:57266200-57274200	Weak transcription	Liver	Liver
11	chr15:57267000-57273200	Weak transcription	Dnd41	blood
12	chr15:57267000-57273400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:57267000-57274600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:57267400-57274000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:57269800-57273800	Enhancers	Brain Hippocampus Middle	brain
16	chr15:57269800-57275200	Weak transcription	Right Ventricle	heart
17	chr15:57269800-57276400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:57269800-57304800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:57270000-57276800	Weak transcription	HSMMtube	muscle
20	chr15:57270000-57280200	Weak transcription	Fetal Brain Male	brain
21	chr15:57270800-57273600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr15:57271000-57273600	Enhancers	K562	blood
23	chr15:57271000-57273800	Enhancers	Brain Cingulate Gyrus	brain
24	chr15:57271200-57276200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:57271400-57275000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:57271400-57276400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:57271600-57274400	Enhancers	Brain Anterior Caudate	brain
28	chr15:57271600-57275200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:57271600-57275800	Enhancers	Brain Substantia Nigra	brain
30	chr15:57271600-57276600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr15:57271800-57273800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:57271800-57275000	Weak transcription	HepG2	liver
33	chr15:57271800-57276600	Weak transcription	NHLF	lung
34	chr15:57272000-57273400	Enhancers	Colon Smooth Muscle	Colon
35	chr15:57272000-57274600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr15:57272000-57275000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:57272000-57275400	Enhancers	A549	lung
38	chr15:57272000-57275800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr15:57272000-57276800	Weak transcription	Hela-S3	cervix
40	chr15:57272200-57273600	Enhancers	Small Intestine	intestine
41	chr15:57272200-57273600	Weak transcription	HUVEC	blood vessel
42	chr15:57272200-57273800	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr15:57272200-57274200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:57272200-57274200	Genic enhancers	Fetal Thymus	thymus
45	chr15:57272200-57274400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:57272200-57276000	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr15:57272200-57276600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:57272200-57276600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:57272200-57280600	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr15:57272200-57282400	Enhancers	Primary T cells from cord blood	blood

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