Variant report

Variant	rs2435894
Chromosome Location	chr15:57218069-57218070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2243575	1.00[AMR][1000 genomes]
rs2435899	1.00[AMR][1000 genomes]
rs2439924	1.00[AMR][1000 genomes]
rs2566839	0.94[AFR][1000 genomes]
rs2566847	1.00[AMR][1000 genomes]
rs2585079	1.00[AMR][1000 genomes]
rs2585085	1.00[AMR][1000 genomes]
rs2585095	1.00[AMR][1000 genomes]
rs2585101	1.00[AMR][1000 genomes]
rs2585109	1.00[AMR][1000 genomes]
rs2585113	1.00[AMR][1000 genomes]
rs2615234	1.00[AMR][1000 genomes]
rs2703581	1.00[AMR][1000 genomes]
rs2703585	1.00[AMR][1000 genomes]
rs2733175	1.00[AMR][1000 genomes]
rs2733184	1.00[AMR][1000 genomes]
rs2733308	1.00[AMR][1000 genomes]
rs475512	1.00[AMR][1000 genomes]
rs479060	1.00[AMR][1000 genomes]
rs508037	1.00[AMR][1000 genomes]
rs541840	1.00[AMR][1000 genomes]
rs795035	1.00[AMR][1000 genomes]
rs795036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57218200	Weak transcription	Small Intestine	intestine
2	chr15:57212400-57219000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:57212400-57222000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:57212400-57224800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:57212400-57224800	Weak transcription	Spleen	Spleen
6	chr15:57212400-57230400	Weak transcription	Lung	lung
7	chr15:57212400-57233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
9	chr15:57212600-57218200	Weak transcription	Aorta	Aorta
10	chr15:57212600-57224000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:57212800-57218200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:57212800-57218600	Weak transcription	Fetal Stomach	stomach
14	chr15:57212800-57219200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:57212800-57220200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr15:57212800-57220600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:57212800-57222200	Weak transcription	Left Ventricle	heart
18	chr15:57212800-57222200	Weak transcription	Psoas Muscle	Psoas
19	chr15:57212800-57222200	Weak transcription	Right Ventricle	heart
20	chr15:57212800-57222400	Weak transcription	Ovary	ovary
21	chr15:57212800-57224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:57212800-57227200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:57213000-57218600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:57213000-57219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:57213000-57220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:57213000-57222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:57213000-57222400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr15:57213000-57227400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:57213200-57218600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:57213200-57218600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr15:57213200-57221000	Weak transcription	Adipose Nuclei	Adipose
32	chr15:57213200-57221200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:57213200-57223400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:57213400-57218200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:57213400-57219000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:57213400-57219000	Weak transcription	HSMMtube	muscle
38	chr15:57213400-57220200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:57213400-57220200	Weak transcription	NHEK	skin
40	chr15:57213400-57223200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:57213400-57226800	Weak transcription	Brain Germinal Matrix	brain
42	chr15:57213600-57218200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:57213600-57218200	Strong transcription	Placenta	Placenta
44	chr15:57213600-57219000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:57214000-57219400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:57214200-57218600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:57214200-57218800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:57214200-57220800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:57214400-57218200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr15:57214400-57219200	Strong transcription	NH-A	brain

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