The 2.0 version of rSNPBase

Variant report

Variant rs479060
Chromosome Location chr15:56998415-56998416
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:56919800-57016600 Weak transcription Small Intestine intestine
2 chr15:56937400-57000200 Weak transcription Colonic Mucosa Colon
3 chr15:56958400-57019200 Weak transcription Fetal Intestine Small intestine
4 chr15:56971000-57023400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr15:56984000-56998800 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr15:56987200-56999600 Strong transcription Fetal Thymus thymus
7 chr15:56988800-57008400 Weak transcription Fetal Heart heart
8 chr15:56990000-56999000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr15:56990000-56999200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr15:56990200-56999400 Strong transcription Primary B cells from peripheral blood blood
11 chr15:56990200-56999400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr15:56990400-56998800 Strong transcription Primary T helper cells fromperipheralblood blood
13 chr15:56990400-56999000 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr15:56990600-56998600 Strong transcription Breast Myoepithelial Primary Cells Breast
15 chr15:56991200-56999600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr15:56991200-57001200 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr15:56992400-57008400 Weak transcription K562 blood
18 chr15:56992400-57010800 Weak transcription Spleen Spleen
19 chr15:56992400-57021800 Weak transcription Right Ventricle heart
20 chr15:56992600-56998600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr15:56992600-57022600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr15:56993000-57016000 Weak transcription Pancreas Pancrea
23 chr15:56993000-57024000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr15:56993200-56998600 Weak transcription HUES6 Cell Line embryonic stem cell
25 chr15:56993200-56999200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
26 chr15:56993200-56999400 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr15:56993200-57000200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr15:56993200-57001200 Weak transcription Stomach Mucosa stomach
29 chr15:56993200-57001600 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr15:56993200-57002400 Weak transcription NHEK skin
31 chr15:56993200-57007200 Weak transcription Primary T killer naive cells fromperipheralblood blood
32 chr15:56993200-57008200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
33 chr15:56993200-57010800 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr15:56993200-57010800 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr15:56993200-57011600 Weak transcription HMEC breast
36 chr15:56993400-56999200 Weak transcription Skeletal Muscle Male skeletal muscle
37 chr15:56993400-57021600 Weak transcription Fetal Brain Male brain
38 chr15:56994000-57023800 Weak transcription Fetal Kidney kidney
39 chr15:56994400-56998800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr15:56994600-56998800 Strong transcription Primary T cells fromperipheralblood blood
41 chr15:56994800-56998600 Strong transcription Duodenum Mucosa Duodenum
42 chr15:56994800-56998800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr15:56994800-56998800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
44 chr15:56995600-57000200 Weak transcription Brain Hippocampus Middle brain
45 chr15:56995600-57000600 Weak transcription Brain Germinal Matrix brain
46 chr15:56995800-56999200 Weak transcription iPS-20b Cell Line embryonic stem cell
47 chr15:56995800-56999800 Weak transcription Fetal Brain Female brain
48 chr15:56995800-57000200 Weak transcription Brain Substantia Nigra brain
49 chr15:56995800-57016000 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr15:56995800-57022200 Weak transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015