Variant report

Variant	rs795035
Chromosome Location	chr15:57000760-57000761
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr15:57000613-57000926	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57000713..57002937-chr15:57007883..57010798,2	K562	blood:
2	chr15:56999062..57001613-chr15:57024278..57025915,2	MCF-7	breast:

Variant related genes	Relation type
ZNF280D	TF binding region
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10851611	1.00[AMR][1000 genomes]
rs12898673	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2170460	1.00[AMR][1000 genomes]
rs2414481	1.00[AMR][1000 genomes]
rs2435894	1.00[AMR][1000 genomes]
rs4143730	1.00[AMR][1000 genomes]
rs4448877	1.00[AMR][1000 genomes]
rs475512	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4774880	1.00[AMR][1000 genomes]
rs4774882	1.00[AMR][1000 genomes]
rs4774883	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs479060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs508037	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs541840	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493878	1.00[AMR][1000 genomes]
rs6493879	1.00[AMR][1000 genomes]
rs6493881	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs795036	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025919	1.00[AMR][1000 genomes]
rs8043381	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs989535	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
2	chr15:56958400-57019200	Weak transcription	Fetal Intestine Small	intestine
3	chr15:56971000-57023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:56988800-57008400	Weak transcription	Fetal Heart	heart
5	chr15:56991200-57001200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:56992400-57008400	Weak transcription	K562	blood
7	chr15:56992400-57010800	Weak transcription	Spleen	Spleen
8	chr15:56992400-57021800	Weak transcription	Right Ventricle	heart
9	chr15:56992600-57022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:56993000-57016000	Weak transcription	Pancreas	Pancrea
11	chr15:56993000-57024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:56993200-57001200	Weak transcription	Stomach Mucosa	stomach
13	chr15:56993200-57001600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:56993200-57002400	Weak transcription	NHEK	skin
15	chr15:56993200-57007200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:56993200-57008200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:56993200-57010800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr15:56993200-57010800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:56993200-57011600	Weak transcription	HMEC	breast
20	chr15:56993400-57021600	Weak transcription	Fetal Brain Male	brain
21	chr15:56994000-57023800	Weak transcription	Fetal Kidney	kidney
22	chr15:56995800-57016000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:56995800-57022200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr15:56996000-57004600	Weak transcription	Esophagus	oesophagus
25	chr15:56996000-57005400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:56996000-57008000	Weak transcription	Brain Angular Gyrus	brain
27	chr15:56996000-57009200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:56996000-57010800	Weak transcription	Brain Anterior Caudate	brain
29	chr15:56996000-57011000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:56996000-57011400	Weak transcription	Aorta	Aorta
31	chr15:56996000-57013000	Weak transcription	Ovary	ovary
32	chr15:56996000-57021800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr15:56996200-57001000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:56996400-57007600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr15:56996400-57015800	Weak transcription	Fetal Intestine Large	intestine
36	chr15:56996400-57021600	Weak transcription	HSMMtube	muscle
37	chr15:56996400-57022600	Weak transcription	NH-A	brain
38	chr15:56996600-57011000	Weak transcription	Dnd41	blood
39	chr15:56996800-57022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:56997000-57003800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:56997000-57016000	Weak transcription	HSMM	muscle
42	chr15:56997200-57000800	Weak transcription	Osteobl	bone
43	chr15:56997200-57002200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:56997200-57002200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:56997200-57002400	Weak transcription	Thymus	Thymus
46	chr15:56997200-57003400	Weak transcription	HUVEC	blood vessel
47	chr15:56997200-57015800	Weak transcription	Liver	Liver
48	chr15:56997200-57016400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr15:56997200-57016600	Weak transcription	Left Ventricle	heart
50	chr15:56997200-57022800	Weak transcription	Gastric	stomach

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