Variant report

Variant	rs4774880
Chromosome Location	chr15:56915034-56915035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10851611	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12898673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1660957	1.00[ASN][1000 genomes]
rs2170460	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2414481	1.00[AMR][1000 genomes]
rs4143730	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4448877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs475512	1.00[AMR][1000 genomes]
rs4774882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4774883	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs479060	1.00[AMR][1000 genomes]
rs508037	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs541840	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6493878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493881	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs795035	1.00[AMR][1000 genomes]
rs795036	1.00[AMR][1000 genomes]
rs8025919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8043381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs989535	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56902800-56945400	Weak transcription	Right Ventricle	heart
2	chr15:56905600-56923600	Weak transcription	Left Ventricle	heart
3	chr15:56908800-56923400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:56910600-56945400	Weak transcription	HSMMtube	muscle
5	chr15:56912800-56921000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:56912800-56923400	Weak transcription	Adipose Nuclei	Adipose
7	chr15:56912800-56923400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:56912800-56957000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr15:56913000-56923400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:56913200-56915600	Strong transcription	Fetal Thymus	thymus
11	chr15:56913200-56923200	Weak transcription	HSMM	muscle
12	chr15:56913200-56923600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr15:56913200-56929600	Weak transcription	NHDF-Ad	bronchial
14	chr15:56913400-56923600	Weak transcription	Dnd41	blood
15	chr15:56913400-56955200	Weak transcription	Aorta	Aorta
16	chr15:56914000-56915400	Weak transcription	Thymus	Thymus
17	chr15:56914000-56921000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:56914000-56929400	Weak transcription	Fetal Stomach	stomach
19	chr15:56914200-56921200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:56914800-56915200	Enhancers	Liver	Liver
21	chr15:56914800-56915400	Strong transcription	Primary T cells from cord blood	blood

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