Variant report

Variant	rs2585859
Chromosome Location	chr17:63123343-63123344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs186167	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1867212	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1867213	0.83[EUR][1000 genomes]
rs2007835	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs299820	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs299821	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs299834	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs299837	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs299838	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs299842	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs414341	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4790958	0.86[EUR][1000 genomes]
rs510199	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63118800-63127000	Weak transcription	Spleen	Spleen
2	chr17:63119800-63133600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr17:63120200-63123400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:63120200-63124400	Weak transcription	Aorta	Aorta
5	chr17:63120200-63126400	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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